RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 PTCHD1Q96NR3 888 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 OR6C1Q96RD1 312 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 SDF2Q99470 211 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 PELOQ9BRX2 385 aaKnown RBP18.5■□□□□ 0.55
TRIM47-204ENST00000587339 PINK1Q9BXM7 581 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 SLC7A5P2Q9GIP4 190 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 TRIM45Q9H8W5 580 aaPredicted RBP18.5■□□□□ 0.55
TRIM47-204ENST00000587339 PNPLA3Q9NST1 481 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 SRPK3Q9UPE1 567 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 SATB2Q9UPW6 733 aa18.5■□□□□ 0.55
TRIM47-204ENST00000587339 HYAL3O43820 417 aaPredicted RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 GADD45GO95257 159 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ZIC2O95409 532 aaPredicted RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 LGI1O95970 557 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 MAP3K8P41279 467 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ZNF155Q12901 538 aaPredicted RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ZNF267Q14586 743 aaPredicted RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 MINDY4Q4G0A6 757 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 DCST2Q5T1A1 773 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 CCNJQ5T5M9 372 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 MFSD4BQ5TF39 518 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 C1orf189Q5VU69 101 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 TTC23Q5W5X9 447 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 TCTN3Q6NUS6 607 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ZC3H14Q6PJT7 736 aaKnown RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 DEF8Q6ZN54 512 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 COMTD1Q86VU5 262 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 OFCC1Q8IZS5 231 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ZNF555Q8NEP9 628 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 PHF10Q8WUB8 498 aaKnown RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 PIK3R3Q92569 461 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 GFM1Q96RP9 751 aaKnown RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 MBOAT4Q96T53 435 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 MTHFD2LQ9H903 347 aaPredicted RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ACER3Q9NUN7 267 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 FAM118AQ9NWS6 357 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 MMACHCQ9Y4U1 282 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 PCDHGA5Q9Y5G8 931 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ADAMTS20P59510 1910 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 SSTR4P31391 388 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 GABRA3P34903 492 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 PGDP52209 483 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 IL1RL1Q01638 556 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 DUSP8Q13202 625 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 KCNAB2Q13303 367 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ARHGAP40Q5TG30 622 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 TYW3Q6IPR3 259 aaKnown RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 USP51Q70EK9 711 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 GALNT5Q7Z7M9 940 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 RBM45Q8IUH3 476 aaKnown RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 LACC1Q8IV20 430 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 CHDHQ8NE62 594 aaPredicted RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 OR4D11Q8NGI4 311 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 OR4C15Q8NGM1 316 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 GIPC3Q8TF64 312 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 ZNF578Q96N58 590 aaPredicted RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 WFDC6Q9BQY6 131 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 CNPPD1Q9BV87 410 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 CACYBPQ9HB71 228 aaKnown RBP18.49■□□□□ 0.55
TRIM47-204ENST00000587339 RHCGQ9UBD6 479 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 KCND3Q9UK17 655 aa18.49■□□□□ 0.55
TRIM47-204ENST00000587339 M0R3H8 397 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 HRKO00198 91 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 FFAR1O14842 300 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 SEMA7AO75326 666 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 STX11O75558 287 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 SOX30O94993 753 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 EPPINO95925 133 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 TNNI3P19429 210 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 EMDP50402 254 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 HMGA2P52926 109 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 ZNHIT3Q15649 155 aaPredicted RBP18.48■□□□□ 0.55
TRIM47-204ENST00000587339 CLPPQ16740 277 aaPredicted RBP18.48■□□□□ 0.55
TRIM47-204ENST00000587339 EXOC3L2Q2M3D2 409 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 COLEC12Q5KU26 742 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 FAHD1Q6P587 224 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 VRK2Q86Y07 508 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 PIK3C3Q8NEB9 887 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 OR52P1PQ8NH57 321 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 CNDP2Q96KP4 475 aaKnown RBP18.48■□□□□ 0.55
TRIM47-204ENST00000587339 ZNF350Q9GZX5 532 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 SLC13A4Q9UKG4 626 aa18.48■□□□□ 0.55
TRIM47-204ENST00000587339 CCDC88CQ9P219 2028 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 PRAMEF2O60811 474 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 MITFO75030 526 aaPredicted RBP18.47■□□□□ 0.55
TRIM47-204ENST00000587339 NKX2-2O95096 273 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 AK1P00568 194 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 PRKAR1BP31321 381 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 GALNSP34059 522 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 PIGAP37287 484 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 GRK6P43250 576 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 MICAQ29983 383 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 PHF19Q5T6S3 580 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 RHBDD2Q6NTF9 364 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 QSOX2Q6ZRP7 698 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 PEX5LQ8IYB4 626 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 TAGAPQ8N103 731 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 OR10G2Q8NGC3 310 aa18.47■□□□□ 0.55
TRIM47-204ENST00000587339 HOXB13Q92826 284 aaPredicted RBP18.47■□□□□ 0.55
TRIM47-204ENST00000587339 MUS81Q96NY9 551 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms