RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 EVA1AQ9H8M9 152 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 ADAP2Q9NPF8 381 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 PRMT8Q9NR22 394 aaPredicted RBP13.25□□□□□ -0.29
LIG3-205ENST00000585941 PTTG2Q9NZH5 202 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 SEMA5BQ9P283 1151 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 RHCGQ9UBD6 479 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 RSL24D1Q9UHA3 163 aaKnown RBP13.25□□□□□ -0.29
LIG3-205ENST00000585941 PCDHGA6Q9Y5G7 932 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 TRBV4-1A0A0J9YWV2 114 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 M0R3H8 397 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ZNF749O43361 778 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 MPZL2O60487 215 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 SEMA7AO75326 666 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 STX11O75558 287 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 EPHA2P29317 976 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 SOX18P35713 384 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 MAP3K8P41279 467 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 DHPSP49366 369 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 PDX1P52945 283 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 HSD17B7P56937 341 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ZXDAP98168 799 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 STX4Q12846 297 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 COX10Q12887 443 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 AP1ARQ63HQ0 302 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 PMS2CLQ68D20 193 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 B3GNT6Q6ZMB0 384 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 RBM45Q8IUH3 476 aaKnown RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 GALNT12Q8IXK2 581 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 SLC35F3Q8IY50 421 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 COX18Q8N8Q8 333 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 BPIFB6Q8NFQ5 453 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 TOR1AIP2Q8NFQ8 470 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 OR6T1Q8NGN1 323 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ZNF420Q8TAQ5 688 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 CNIH3Q8TBE1 160 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 IPCEF1Q8WWN9 437 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 HOXB13Q92826 284 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 RBM18Q96H35 190 aaKnown RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 FUZQ9BT04 418 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 UCK2Q9BZX2 261 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ZNF350Q9GZX5 532 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 SAP130Q9H0E3 1048 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 CXorf21Q9HAI6 301 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 PRTFDC1Q9NRG1 225 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 NLGN3Q9NZ94 848 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 HCN3Q9P1Z3 774 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 PCDHGB1Q9Y5G3 927 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 MN1Q10571 1320 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 PCDH15Q96QU1 1955 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 SH3PXD2BA1X283 911 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 TTC36A6NLP5 189 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 H3BSA7 217 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 B4GAT1O43505 415 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 OR10H3O60404 316 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 EPPINO95925 133 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 GASTP01350 101 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 DBIP07108 87 aaKnown RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 CTSBP07858 339 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 MSL3P1P0C860 447 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 AGXTP21549 392 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 GALNSP34059 522 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 IFNGR2P38484 337 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 OR1D5P58170 312 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 CDC42P60953 191 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 BNIP3Q12983 259 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ZNHIT3Q15649 155 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 DCST2Q5T1A1 773 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 TYW3Q6IPR3 259 aaKnown RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 WDR74Q6RFH5 385 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 MED25Q71SY5 747 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 PRSS42Q7Z5A4 293 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 B3GNT8Q7Z7M8 397 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 LACC1Q8IV20 430 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 P3H2Q8IVL5 708 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 SPARTQ8N0X7 666 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ZNF619Q8N2I2 560 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 TMIGD2Q96BF3 282 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 MMABQ96EY8 250 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 PEX11GQ96HA9 241 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 POLR2J2Q9GZM3 115 aaKnown RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 POLR2J3Q9H1A7 115 aaKnown RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 DUSP21Q9H596 190 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ARMC7Q9H6L4 198 aa13.24□□□□□ -0.29
LIG3-205ENST00000585941 ZNF443Q9Y2A4 671 aaPredicted RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 TNRC6BQ9UPQ9 1833 aaKnown RBP13.24□□□□□ -0.29
LIG3-205ENST00000585941 CABIN1Q9Y6J0 2220 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 AGAP5A6NIR3 686 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 AP3D1O14617 1153 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 YKT6O15498 198 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 HRO43593 1189 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 PCDHGA12O60330 932 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 FCMRO60667 390 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 NKX2-2O95096 273 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 CCNYL3P0C7X3 344 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 OSMP13725 252 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 PNLIPP16233 465 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 PAX7P23759 505 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 CRISP1P54107 249 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 TAS2R41P59536 307 aa13.23□□□□□ -0.29
LIG3-205ENST00000585941 SLC35A2P78381 396 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms