RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 A8MU76 341 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 UBXN7O94888 489 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 MYL12AP19105 171 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 MPIP34949 423 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 MAP4K2Q12851 820 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 TPBGQ13641 420 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 BCL2A1Q16548 175 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 PLK5Q496M5 336 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 LAPTM4BQ86VI4 370 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 CLDN22Q8N7P3 220 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 HERVK_113Q902F9 699 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 MSLNLQ96KJ4 702 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 C1QTNF2Q9BXJ5 285 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 MCOLN1Q9GZU1 580 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 YARS2Q9Y2Z4 477 aaKnown RBP21.37■■□□□ 1.01
VPS53-211ENST00000571805 ADH1BP00325 375 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 ALPPP05187 535 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 CHRM5P08912 532 aaPredicted RBP21.37■■□□□ 1.01
VPS53-211ENST00000571805 LRRC32Q14392 662 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 TRAM2Q15035 370 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 RPE65Q16518 533 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 RASSF6Q6ZTQ3 369 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 FAM181AQ8N9Y4 354 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 MFSD9Q8NBP5 474 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 MIXL1Q9H2W2 232 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 RMI1Q9H9A7 625 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 ISYNA1Q9NPH2 558 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 EQTNQ9NQ60 294 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 CNIH4Q9P003 139 aa21.37■■□□□ 1.01
VPS53-211ENST00000571805 GIMAP1-GIMAP5A0A087WTJ2 511 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 CPSF4LA6NMK7 179 aaKnown RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 KDM4EB2RXH2 506 aaPredicted RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 TSPAN19P0C672 248 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 NR2F6P10588 404 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 TRHRP34981 398 aaPredicted RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 HOXD12P35452 270 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 TSFMP43897 325 aaKnown RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 OMPP47874 163 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 MTNR1AP48039 350 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 RFX2P48378 723 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 MLLT1Q03111 559 aaPredicted RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 TGM3Q08188 693 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 DUSP6Q16828 381 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 GLYR1Q49A26 553 aaPredicted RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 MINDY4Q4G0A6 757 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 ZNF425Q6IV72 752 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 PSD4Q8NDX1 1056 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 ANKK1Q8NFD2 765 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 GATAD2BQ8WXI9 593 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 NR4A3Q92570 626 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 GIMAP5Q96F15 307 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 NEDD4LQ96PU5 975 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 GPSM3Q9Y4H4 160 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 IRGMA1A4Y4 181 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 LRRTM2O43300 516 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 ZIC2O95409 532 aaPredicted RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 IFNGR2P38484 337 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 OR2B6P58173 313 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 RPS25P62851 125 aaKnown RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 PSRC1Q6PGN9 363 aaPredicted RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 UBQLNLQ8IYU4 475 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 SRFBP1Q8NEF9 429 aaKnown RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 FAM46AQ96IP4 442 aaKnown RBP21.36■■□□□ 1.01
VPS53-211ENST00000571805 ABCB9Q9NP78 766 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 GDE1Q9NZC3 331 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 NPAP1Q9NZP6 1156 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 LIPT1Q9Y234 373 aa21.36■■□□□ 1.01
VPS53-211ENST00000571805 PRR23AA6NEV1 266 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 LIMS3P0CW19 117 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 LIMS4P0CW20 117 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 IL7P13232 177 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 COPZ1P61923 177 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 HNRNPA0Q13151 305 aaKnown RBP21.35■■□□□ 1.01
VPS53-211ENST00000571805 GPR50Q13585 617 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 PLA2G2FQ9BZM2 168 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 MOSPD1Q9UJG1 213 aa21.35■■□□□ 1.01
VPS53-211ENST00000571805 SNTNA6NMZ2 147 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 KCNJ13O60928 360 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 NKX2-5P52952 324 aaPredicted RBP21.34■■□□□ 1.01
VPS53-211ENST00000571805 RPS21P63220 83 aaKnown RBP21.34■■□□□ 1.01
VPS53-211ENST00000571805 ST3GAL3Q11203 375 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 SGCGQ13326 291 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 COL9A2Q14055 689 aaPredicted RBP21.34■■□□□ 1.01
VPS53-211ENST00000571805 LTB4RQ15722 352 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 ZNF730Q6ZMV8 503 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 ZNF485Q8NCK3 441 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 JPH3Q8WXH2 748 aaPredicted RBP21.34■■□□□ 1.01
VPS53-211ENST00000571805 KAT2AQ92830 837 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 MED18Q9BUE0 208 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 ANKRD19PQ9H560 264 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 SCAMP1O15126 338 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 FCMRO60667 390 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 ASGR2P07307 311 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 AZGP1P25311 298 aaKnown RBP21.34■■□□□ 1.01
VPS53-211ENST00000571805 SDC2P34741 201 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 IGFALSP35858 605 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 HTR3AP46098 478 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 NXNL2Q5VZ03 156 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 SLC35A4Q96G79 324 aa21.34■■□□□ 1.01
VPS53-211ENST00000571805 KCTD7Q96MP8 289 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms