RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PIK3R3Q92569 461 aa28.41■■■□□ 2.14
CTCF-203ENST00000566078 SLC47A1Q96FL8 570 aa28.41■■■□□ 2.14
CTCF-203ENST00000566078 ADPRHL2Q9NX46 363 aa28.41■■■□□ 2.14
CTCF-203ENST00000566078 C19orf25Q9UFG5 118 aaPredicted RBP28.41■■■□□ 2.14
CTCF-203ENST00000566078 ANGPTL2Q9UKU9 493 aa28.41■■■□□ 2.14
CTCF-203ENST00000566078 M0QX08 132 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 NKX2-2O95096 273 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 H6PDO95479 791 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 GABRA3P34903 492 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 HPCAP84074 193 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 FAM98BQ52LJ0 330 aaKnown RBP28.4■■■□□ 2.14
CTCF-203ENST00000566078 EIF3MQ7L2H7 374 aaKnown RBP28.4■■■□□ 2.14
CTCF-203ENST00000566078 GALNT15Q8N3T1 639 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 MORN4Q8NDC4 146 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 POP5Q969H6 163 aaKnown RBP28.4■■■□□ 2.14
CTCF-203ENST00000566078 RNF145Q96MT1 663 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 TRNT1Q96Q11 434 aaKnown RBP28.4■■■□□ 2.14
CTCF-203ENST00000566078 EFHD1Q9BUP0 239 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 NUDT9Q9BW91 350 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 ITPAQ9BY32 194 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 ARMC1Q9NVT9 282 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 COPS7AQ9UBW8 275 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 PCDHGB3Q9Y5G1 929 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 KLF7O75840 302 aaPredicted RBP28.4■■■□□ 2.14
CTCF-203ENST00000566078 PDE9AO76083 593 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 UMODP07911 640 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 FOLR3P41439 243 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 SESN3P58005 492 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 CPEB2Q7Z5Q1 589 aaKnown RBP28.4■■■□□ 2.14
CTCF-203ENST00000566078 ESX1Q8N693 406 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 OR2Y1Q8NGV0 311 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 PYURFQ96I23 114 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 POLR1BQ9H9Y6 1135 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 BCL2L10Q9HD36 194 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 CALML5Q9NZT1 146 aa28.4■■■□□ 2.14
CTCF-203ENST00000566078 CFAP54Q96N23 3096 aa28.39■■■□□ 2.14
CTCF-203ENST00000566078 SAGE2PA6NJ88 616 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 CD63P08962 238 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 PSG6Q00889 435 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 CHRNB3Q05901 458 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 ARHGAP11BQ3KRB8 267 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 IRAK1BP1Q5VVH5 260 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 PRAMEF8Q5VWM4 474 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 PRAMEF7Q5VXH5 474 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 OR1N1Q8NGS0 311 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 C8orf44Q96CB5 159 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 TPD52L3Q96J77 140 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 HSH2DQ96JZ2 352 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 SLC46A1Q96NT5 459 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 ZNF607Q96SK3 696 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 B3GNT4Q9C0J1 378 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 PADI2Q9Y2J8 665 aa28.39■■■□□ 2.13
CTCF-203ENST00000566078 GXYLT2A0PJZ3 443 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 SUV39H1O43463 412 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 TPST1O60507 370 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 IFNA14P01570 189 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 TCN2P20062 427 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 POU6F2P78424 691 aaPredicted RBP28.38■■■□□ 2.13
CTCF-203ENST00000566078 SLC34A1Q06495 639 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 ELOAQ14241 798 aaKnown RBP28.38■■■□□ 2.13
CTCF-203ENST00000566078 DCST2Q5T1A1 773 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 PAPD4Q6PIY7 484 aaKnown RBP28.38■■■□□ 2.13
CTCF-203ENST00000566078 NPSR1Q6W5P4 371 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 RASSF4Q9H2L5 321 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 DLL3Q9NYJ7 618 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 CFL2Q9Y281 166 aa28.38■■■□□ 2.13
CTCF-203ENST00000566078 PTPRZ1P23471 2315 aaPredicted RBP28.38■■■□□ 2.13
CTCF-203ENST00000566078 A0A0G2JPF8 293 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 HNRNPCL2B2RXH8 293 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 HNRNPCL3B7ZW38 293 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 TIPRLO75663 272 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 HNRNPCL4P0DMR1 293 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 RAP2AP10114 183 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 CCNJQ5T5M9 372 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 LRRC74BQ6ZQY2 392 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 VTCN1Q7Z7D3 282 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 KRT73Q86Y46 540 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 PAPD5Q8NDF8 572 aaKnown RBP28.37■■■□□ 2.13
CTCF-203ENST00000566078 CHDHQ8NE62 594 aaPredicted RBP28.37■■■□□ 2.13
CTCF-203ENST00000566078 COL21A1Q96P44 957 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 BTBD2Q9BX70 525 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 SLC38A1Q9H2H9 487 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 MAGIXQ9H6Y5 334 aa28.37■■■□□ 2.13
CTCF-203ENST00000566078 SOX30O94993 753 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 AK1P00568 194 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 MT-ND1P03886 318 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 RAB40ALP0C0E4 278 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 CHRNEQ04844 493 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 NNATQ16517 81 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 NLGN4XQ8N0W4 816 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 PQLC1Q8N2U9 271 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 NLGN4YQ8NFZ3 816 aaPredicted RBP28.36■■■□□ 2.13
CTCF-203ENST00000566078 RMND5BQ96G75 393 aaPredicted RBP28.36■■■□□ 2.13
CTCF-203ENST00000566078 SDF2Q99470 211 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 LPAR4Q99677 370 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 WDR77Q9BQA1 342 aaPredicted RBP28.36■■■□□ 2.13
CTCF-203ENST00000566078 GPC6Q9Y625 555 aaPredicted RBP28.36■■■□□ 2.13
CTCF-203ENST00000566078 TTC36A6NLP5 189 aa28.36■■■□□ 2.13
CTCF-203ENST00000566078 SEC24DO94855 1032 aaPredicted RBP28.36■■■□□ 2.13
CTCF-203ENST00000566078 SELENOWP63302 87 aa28.36■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms