RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GDAP2Q9NXN4 497 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 BARHL2Q9NY43 387 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 MRPS2Q9Y399 296 aaKnown RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 AP4B1Q9Y6B7 739 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 PDCD11Q14690 1871 aaKnown RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 COL1A2P08123 1366 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 HELTA6NFD8 242 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 ANKRD66B4E2M5 251 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 E9PI62 339 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 SDHDO14521 159 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 KCNAB3O43448 404 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 PDE9AO76083 593 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 NADKO95544 446 aaPredicted RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 CPNE6O95741 557 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 MT-ND1P03886 318 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 RAF1P04049 648 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 SERPINF2P08697 491 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 ODC1P11926 461 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 CYP11B1P15538 503 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 NAGAP17050 411 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 BCKDHBP21953 392 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 HTR2AP28223 471 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 SFTPDP35247 375 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 CHI3L1P36222 383 aaPredicted RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 OR1G1P47890 313 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 GLIPR1P48060 266 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 PEX5P50542 639 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 SUCLG1P53597 346 aaKnown RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 INHBCP55103 352 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 ISL1P61371 349 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 GABPAQ06546 454 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 HADHQ16836 314 aaKnown RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 ODF4Q2M2E3 257 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 TAF3Q5VWG9 929 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 TTC23Q5W5X9 447 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 BLOC1S2Q6QNY1 142 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 CBLN3Q6UW01 205 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 LINGO4Q6UY18 593 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 CDHR3Q6ZTQ4 885 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 PAQR9Q6ZVX9 377 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 NANOGNBQ7Z5D8 188 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 FAM131BQ86XD5 332 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 PSTKQ8IV42 348 aaKnown RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 LRRC43Q8N309 656 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 BHLHE22Q8NFJ8 381 aaPredicted RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 GOLGA5Q8TBA6 731 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 TMEM45BQ96B21 275 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 SARAFQ96BY9 339 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 TXNDC15Q96J42 360 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 RBM14Q96PK6 669 aaKnown RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 VPS35Q96QK1 796 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 UBAC1Q9BSL1 405 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 MMTAG2Q9BU76 263 aaKnown RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 MAGT1Q9H0U3 335 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 SDCBP2Q9H190 292 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 DPEP2Q9H4A9 486 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 ZNF334Q9HCZ1 680 aaPredicted RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 C6orf203Q9P0P8 240 aaPredicted RBP5.22□□□□□ -1.57
VPS53-219ENST00000576019 ERVK-19Q9WJR5 959 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 ANK2Q01484 3957 aa5.22□□□□□ -1.57
VPS53-219ENST00000576019 NSD1Q96L73 2696 aaPredicted RBP5.21□□□□□ -1.57
VPS53-219ENST00000576019 HELZP42694 1942 aaKnown RBP5.21□□□□□ -1.57
VPS53-219ENST00000576019 A0A1W2PRB8 838 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 GRID2IPA4D2P6 1211 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 ARHGEF35A5YM69 484 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 GAGE12JA6NER3 117 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 C15orf62A8K5M9 175 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 ZNF197O14709 1029 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 SYT7O43581 403 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 IFNA2P01563 188 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 FGF2P09038 288 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 POLR2CP19387 275 aaPredicted RBP5.21□□□□□ -1.58
VPS53-219ENST00000576019 WT1P19544 449 aaPredicted RBP5.21□□□□□ -1.58
VPS53-219ENST00000576019 HNF1AP20823 631 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 DPP4P27487 766 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 SLC6A8P48029 635 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 GHRHRQ02643 423 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 EEF1A2Q05639 463 aaKnown RBP5.21□□□□□ -1.58
VPS53-219ENST00000576019 NME3Q13232 169 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 TUBA3CQ13748 450 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 SPHARQ15513 63 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 DUOXA1Q1HG43 343 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 ATF7IP2Q5U623 682 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 NIPAL3Q6P499 406 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 LRRC8BQ6P9F7 803 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 TUBA3EQ6PEY2 450 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 CPEB2Q7Z5Q1 589 aaKnown RBP5.21□□□□□ -1.58
VPS53-219ENST00000576019 ZNF321PQ8N8H1 164 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 NIPA2Q8N8Q9 360 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 LRTM2Q8N967 370 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 FAM184AQ8NB25 1140 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 ZNF564Q8TBZ8 553 aaPredicted RBP5.21□□□□□ -1.58
VPS53-219ENST00000576019 INPP5DQ92835 1189 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 ELSPBP1Q96BH3 223 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 MAP3K3Q99759 626 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 SLITRK6Q9H5Y7 841 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 MED20Q9H944 212 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 COG4Q9H9E3 785 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 FN3KRPQ9HA64 309 aa5.21□□□□□ -1.58
VPS53-219ENST00000576019 SLC17A6Q9P2U8 582 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms