RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ATXN10Q9UBB4 475 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 NEU3Q9UQ49 428 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CFL2Q9Y281 166 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 EXOC6BQ9Y2D4 811 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CAB39Q9Y376 341 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 ELP1O95163 1332 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ERICH3Q5RHP9 1530 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 EIF3AQ14152 1382 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.61□□□□□ -2.15
NUP54-208ENST00000508604 TNIKQ9UKE5 1360 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 HTR3EA5X5Y0 456 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 OR5H15A6NDH6 313 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TSPY2A6NKD2 308 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 OR5K4A6NMS3 321 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 LRRIQ3A6PVS8 624 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 ZNF724A8MTY0 619 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 EEF2KO00418 725 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 TRDMT1O14717 391 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 STX6O43752 255 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SPOPO43791 374 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 RANBP6O60518 1105 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 PALMO75781 387 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 DUSP14O95147 198 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 SNX4O95219 450 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 HSPA4LO95757 839 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SLC4A1P02730 911 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 APOA4P06727 396 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SLC35E2P0CK97 266 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TSPY3P0CV98 308 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TSPY8P0CW00 308 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 IFNAR1P17181 557 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 IL32P24001 234 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 PTAFRP25105 342 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CD86P42081 329 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ACADVLP49748 655 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 GMPSP49915 693 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 SERPINB8P50452 374 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 GPC3P51654 580 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SSTP61278 116 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TSPY1Q01534 308 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 GBE1Q04446 702 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 KLHL30Q0D2K2 578 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 PSMD6Q15008 389 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 STK11Q15831 433 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ANKDD1AQ495B1 522 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 FUT11Q495W5 492 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CFAP221Q4G0U5 840 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 LBHQ53QV2 105 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 CST9LP1Q5W188 147 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ZNF776Q68DI1 518 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 TMEM53Q6P2H8 277 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 NEK5Q6P3R8 708 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 DCLRE1AQ6PJP8 1040 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SCARA5Q6ZMJ2 495 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CCDC121Q6ZUS5 278 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CENPQQ7L2Z9 268 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 BNIPLQ7Z465 357 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 FAM219AQ8IW50 185 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TMCO5AQ8N6Q1 288 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CEP112Q8N8E3 955 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 BBOF1Q8ND07 529 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 CCDC112Q8NEF3 446 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 NEK11Q8NG66 645 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 OR13F1Q8NGS4 319 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 FBXO30Q8TB52 745 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 MGARPQ8TDB4 240 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TRAF3IP1Q8TDR0 691 aaPredicted RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 KIFAP3Q92845 792 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 OPTNQ96CV9 577 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ERO1AQ96HE7 468 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 VSIG2Q96IQ7 327 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TSC22D3Q99576 134 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 KIR2DL4Q99706 377 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TSG101Q99816 390 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 EDEM3Q9BZQ6 932 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 API5Q9BZZ5 524 aaKnown RBP1.61□□□□□ -2.15
NUP54-208ENST00000508604 NMUR2Q9GZQ4 415 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 DRC3Q9H069 523 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TIGARQ9NQ88 270 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 HPF1Q9NWY4 346 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 SLC39A1Q9NY26 324 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 NDUFA13Q9P0J0 144 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 TEKT2Q9UIF3 430 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 KIAA1257Q9ULG3 409 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 NUDCQ9Y266 331 aa1.61□□□□□ -2.15
NUP54-208ENST00000508604 ASTN1O14525 1302 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 KIF7Q2M1P5 1343 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 MYO3BQ8WXR4 1341 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 MTUS2Q5JR59 1369 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 KTN1Q86UP2 1357 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 SOGA1O94964 1423 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 NPATQ14207 1427 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CCDC169A6NNP5 214 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 RNF212BA8MTL3 300 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SPECC1L-ADORA2AF8WAN1 911 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 GOLGA8SH3BPF8 625 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 AP3B1O00203 1094 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CACNB4O00305 520 aaPredicted RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 SLC7A4O43246 635 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 OR5F1O95221 314 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms