RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 GCH1P30793 250 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 APLNRP35414 380 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NKX2-5P52952 324 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 AP1S2P56377 157 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 EDDM3AQ14507 147 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NANOGP8Q6NSW7 305 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 FIP1L1Q6UN15 594 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 LARP4Q71RC2 724 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TMEM17Q86X19 198 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 SHISA4Q96DD7 197 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 THOC3Q96J01 351 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NANOGQ9H9S0 305 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 LANCL2Q9NS86 450 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 C14orf166Q9Y224 244 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 POLHQ9Y253 713 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 RGS9O75916 674 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PORP16435 677 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ERVPABLB-1P60509 514 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 AIMP2Q13155 320 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 UBE2Q1Q7Z7E8 422 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 SLC44A3Q8N4M1 653 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 IL17RCQ8NAC3 791 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 WASF3Q9UPY6 502 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 HYAL3O43820 417 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SNAP29O95721 258 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 FAM163BP0C2L3 166 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SSTR4P31391 388 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 HOXD13P35453 343 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 PCLAFQ15004 111 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 DNM1P34Q6PK57 102 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 TRIM46Q7Z4K8 759 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 CROCCP3Q8IVE0 287 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SENP5Q96HI0 755 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 KLHL15Q96M94 604 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 KCTD7Q96MP8 289 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 OPA3Q9H6K4 179 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 CDH20Q9HBT6 801 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 TARBP1Q13395 1621 aaKnown RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 KANTRA0A1W2PQU2 76 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ACOT7O00154 380 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 BCAT2O15382 392 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF821O75541 412 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 TUSC2O75896 110 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 CAPNS1P04632 268 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 BMXP51813 675 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 NR1H2P55055 460 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 EDDM3BP56851 147 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 CLCA4Q14CN2 919 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 USF2Q15853 346 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 KIAA0895LQ68EN5 471 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MAMDC2Q7Z304 686 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 C2orf42Q9NWW7 574 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 USP22Q9UPT9 525 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 TEX13CA0A0J9YWL9 993 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ANKRD61A6NGH8 418 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 RRP8O43159 456 aaKnown RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 NCR1O76036 304 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 RCBTB2O95199 551 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 E2F1Q01094 437 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SPEM2Q0P670 501 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 PCBP1Q15365 356 aaKnown RBP eCLIP6.97□□□□□ -1.296e-6■□□□□ 8.7
VPS13A-202ENST00000357409 AWAT2Q6E213 333 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 BEST3Q8N1M1 668 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 CENPSQ8N2Z9 138 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 NTPCRQ9BSD7 190 aaKnown RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 CCDC28BQ9BUN5 200 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SLC25A18Q9H1K4 315 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MED11Q9P086 117 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 FZR1Q9UM11 496 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MADDQ8WXG6 1647 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 LOC102723532A0A0G2JNH3 316 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 PIPP12273 146 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MAGEA8P43361 318 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 GNB1P62873 340 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 BATFQ16520 125 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF791Q3KP31 576 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ALDH16A1Q8IZ83 802 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MSL3Q8N5Y2 521 aaKnown RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 BEST4Q8NFU0 473 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 OR8J1Q8NGP2 316 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF347Q96SE7 839 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 EMC6Q9BV81 110 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MROQ9BYG7 248 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MED20Q9H944 212 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ZMAT3Q9HA38 289 aaKnown RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 FBP2O00757 339 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SCRG1O75711 98 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 PYCR1P32322 319 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 RGRP47804 291 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 DAG1Q14118 895 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MRPL21Q7Z2W9 205 aaKnown RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 LRRC25Q8N386 305 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF709Q8N972 641 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 UBAC2Q8NBM4 344 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 MTMR14Q8NCE2 650 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 CENPNQ96H22 339 aaPredicted RBP6.97□□□□□ -1.29
VPS13A-202ENST00000357409 SMOC2Q9H3U7 446 aa6.97□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF175Q9Y473 711 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms