RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PEX11BO96011 259 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 H1F0P07305 194 aaKnown RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 F3P13726 295 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 CYP3A5P20815 502 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 GPD1P21695 349 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 STIP1P31948 543 aaKnown RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 NUMBP49757 651 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 RARRES1P49788 294 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 THOP1P52888 689 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 RPS13P62277 151 aaKnown RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 HNF4GQ14541 408 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 TRIP10Q15642 601 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 PHKG1Q16816 387 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 FHL5Q5TD97 284 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 PAPD7Q5XG87 772 aaKnown RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 SUMO4Q6EEV6 95 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 OR4A47Q6IF82 309 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 CTR9Q6PD62 1173 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 CLEC2AQ6UVW9 174 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 PACS1Q6VY07 963 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 TMEM179Q6ZVK1 233 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 EFL1Q7Z2Z2 1120 aaKnown RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 PTOV1Q86YD1 416 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 KRTAP1-3Q8IUG1 177 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 UBQLNLQ8IYU4 475 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 CDK20Q8IZL9 346 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 SLC34A3Q8N130 599 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 PDCL2Q8N4E4 241 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 LMNTD1Q8N9Z9 388 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 PPFIBP2Q8ND30 876 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 ZNF548Q8NEK5 533 aaPredicted RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 CHPT1Q8WUD6 406 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 RLN3Q8WXF3 142 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 IRGQQ8WZA9 623 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 FGF13Q92913 245 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 NCLNQ969V3 563 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 PHF21AQ96BD5 680 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 RAB39BQ96DA2 213 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 MSANTD3Q96H12 275 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 FCRL4Q96PJ5 515 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 BCL7BQ9BQE9 202 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 CBWD1Q9BRT8 395 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 PLA2G2FQ9BZM2 168 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 C5orf66Q9H5L9 145 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 HPS4Q9NQG7 708 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 DDX28Q9NUL7 540 aaKnown RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 ETNK2Q9NVF9 386 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 TBC1D13Q9NVG8 400 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 C1RLQ9NZP8 487 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 NCKAP1Q9Y2A7 1128 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 CHTOPQ9Y3Y2 248 aaKnown RBP5.24□□□□□ -1.57
VPS53-219ENST00000576019 MEGF8Q7Z7M0 2845 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 TACC2O95359 2948 aa5.24□□□□□ -1.57
VPS53-219ENST00000576019 SDK2Q58EX2 2172 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 LRRK1Q38SD2 2015 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 DOCK6Q96HP0 2047 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 TEX13DA0A0J9YY54 714 aaPredicted RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 GOLGA6L9A6NEM1 432 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 DNALI1O14645 258 aaPredicted RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 CACNG3O60359 315 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 GRAP2O75791 330 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 ITGB3P05106 788 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 CKMT2P17540 419 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 CEBPBP17676 345 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 BMP7P18075 431 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 NCF2P19878 526 aaPredicted RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 CDH3P22223 829 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 CCNE1P24864 410 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 LMO1P25800 156 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 CD52P31358 61 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 RBMXP38159 391 aaKnown RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 ATP5IP56385 69 aaPredicted RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 TUBA4AP68366 448 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 CBX1P83916 185 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 ZNF91Q05481 1191 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 GPR18Q14330 331 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 INPP5JQ15735 1006 aaPredicted RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 NDUFAF5Q5TEU4 345 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 PRAMEF20Q5VT98 475 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 YRDCQ86U90 279 aaKnown RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 FAM228AQ86W67 206 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 PRIMA1Q86XR5 153 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 OR52K1Q8NGK4 314 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 PNPT1Q8TCS8 783 aaKnown RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 PIGTQ969N2 578 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 SLC41A3Q96GZ6 507 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 TMEM19Q96HH6 336 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 NAF1Q96HR8 494 aaKnown RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 DHTKD1Q96HY7 919 aaPredicted RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 ZNF48Q96MX3 618 aaPredicted RBP5.23□□□□□ -1.57
VPS53-219ENST00000576019 USP28Q96RU2 1077 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 PLEKHF1Q96S99 279 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 TIMP4Q99727 224 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 FUNDC2Q9BWH2 189 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 FAM192AQ9GZU8 254 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 ZMYND12Q9H0C1 365 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 KLK15Q9H2R5 256 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 CLSTN2Q9H4D0 955 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 C10orf88Q9H8K7 445 aa5.23□□□□□ -1.57
VPS53-219ENST00000576019 RNF121Q9H920 327 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms