RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 PRRG1O14668 218 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 MAFKO60675 156 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 MBP02144 154 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 TCRBP04435 133 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 HOXC4P09017 264 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-201ENST00000328923 NCF1P14598 390 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-201ENST00000328923 SRP9P49458 86 aaKnown RBP11.23□□□□□ -0.61
SHMT2-201ENST00000328923 AFF1P51825 1210 aaKnown RBP11.23□□□□□ -0.61
SHMT2-201ENST00000328923 PDZK1IP1Q13113 114 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 GSG1Q2KHT4 349 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 CCDC157Q569K6 752 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 MANEAQ5SRI9 462 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 PLAG1Q6DJT9 500 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 VTCN1Q7Z7D3 282 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 MSRB3Q8IXL7 192 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 FBXO39Q8N4B4 442 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 PRR18Q8N4B5 295 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 OR5M9Q8NGP3 310 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 DNAJB8Q8NHS0 232 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 STAG3L4Q8TBR4 150 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 GATAD2BQ8WXI9 593 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 AP3S1Q92572 193 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 SPRTNQ9H040 489 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-201ENST00000328923 RNF32Q9H0A6 362 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.23□□□□□ -0.614e-7■■□□□ 13.4
SHMT2-201ENST00000328923 SEMA4BQ9NPR2 832 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-201ENST00000328923 FKBPLQ9UIM3 349 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 CA14Q9ULX7 337 aa11.23□□□□□ -0.61
SHMT2-201ENST00000328923 URADA6NGE7 173 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 MCRIP1C9JLW8 97 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 PHYHO14832 338 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SOX30O94993 753 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 GLP2RO95838 553 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 F12P00748 615 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SERPINA3P01011 423 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 HPXP02790 462 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 HLA-DQB2P05538 268 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 GABRA1P14867 456 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 NFYAP23511 347 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 CTSOP43234 321 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 NDUFV1P49821 464 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 EPHA4P54764 986 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 CAP1Q01518 475 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 ZNF155Q12901 538 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 CLINT1Q14677 625 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 MORN1Q5T089 497 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 B3GNTL1Q67FW5 361 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 CLEC20AQ6ZU45 233 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 TRIM69Q86WT6 500 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 TMEM17Q86X19 198 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SVBPQ8N300 66 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 PXT1Q8NFP0 134 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 TMEM163Q8TC26 289 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 C12orf66Q96MD2 445 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 NLNQ9BYT8 704 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 ACTL8Q9H568 366 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 WDCPQ9H6R7 721 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 EXTL2Q9UBQ6 330 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 UBQLN1Q9UMX0 589 aaKnown RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 NEU3Q9UQ49 428 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 PCDHB7Q9Y5E2 793 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 FGF10O15520 208 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 KLK8O60259 260 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SUSD5O60279 629 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 NCR1O76036 304 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 IGF2P01344 180 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 TFP02787 698 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 NUDT7P0C024 238 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 DRD2P14416 443 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 PRDX3P30048 256 aaKnown RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 ASMTP46597 345 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 WNT3AP56704 352 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SIM1P81133 766 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 TIAL1Q01085 375 aaKnown RBP eCLIP11.22□□□□□ -0.617e-9■■□□□ 13.1
SHMT2-201ENST00000328923 COTL1Q14019 142 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SPHARQ15513 63 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 LRRN1Q6UXK5 716 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SPAG16Q8N0X2 631 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 NAGSQ8N159 534 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 RYBPQ8N488 228 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 ZNF511Q8NB15 262 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 SH3RF2Q8TEC5 729 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 MISP3Q96FF7 219 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 WDR89Q96FK6 387 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 MARS2Q96GW9 593 aaKnown RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 DERL2Q9GZP9 239 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 TKTL2Q9H0I9 626 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 OSER1Q9NX31 292 aa11.22□□□□□ -0.61
SHMT2-201ENST00000328923 ZNF624Q9P2J8 865 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-201ENST00000328923 G6PDP11413 515 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 ADCYAP1P18509 176 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 STK19P49842 368 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-201ENST00000328923 PPT1P50897 306 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 AKR1C2P52895 323 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 RAC1P63000 192 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 DCDP81605 110 aaKnown RBP11.21□□□□□ -0.61
SHMT2-201ENST00000328923 AKR1C1Q04828 323 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 MAP2K5Q13163 448 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 DUOXA1Q1HG43 343 aa11.21□□□□□ -0.61
SHMT2-201ENST00000328923 METAP1DQ6UB28 335 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms