RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 CERS1P27544 350 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 GRPRP30550 384 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 CCR7P32248 378 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 CBFBQ13951 182 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 GRM7Q14831 915 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 UGT8Q16880 541 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 SPIN3Q5JUX0 258 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 NANSQ9NR45 359 aa17.3■□□□□ 0.36
COL18A1-204ENST00000400337 H2BFMP0C1H6 154 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ENDOUP21128 410 aaKnown RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 NSDHLQ15738 373 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 SGCAQ16586 387 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 LRRC20Q8TCA0 184 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ACOT12Q8WYK0 555 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 APOOQ9BUR5 198 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ACTRT3Q9BYD9 372 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ZNF334Q9HCZ1 680 aaPredicted RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 NOP16Q9Y3C1 178 aaKnown RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 LRRN3E7EW58 273 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 TIMP2P16035 220 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 STOMP27105 288 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ADH7P40394 386 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 PLXDC1Q8IUK5 500 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 HS3ST5Q8IZT8 346 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 OR8S1Q8NH09 359 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 SUN5Q8TC36 379 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 KIAA1143Q96AT1 154 aaPredicted RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 LRRN3Q9H3W5 708 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 GDE1Q9NZC3 331 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 VAPAQ9P0L0 249 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 NPIPA2E9PIF3 369 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 NPIPA3F8WFD2 350 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 KIAA0513O60268 411 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 SLC7A9P82251 487 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 MAB21L1Q13394 359 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 OCLNQ16625 522 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 CARD17Q5XLA6 110 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 PDZD3Q86UT5 571 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 CNTN4Q8IWV2 1026 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ZFP41Q8N8Y5 198 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 MRPL43Q8N983 215 aaKnown RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ZNF717Q9BY31 904 aaPredicted RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 DMRT3Q9NQL9 472 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 CHD4Q14839 1912 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 SLC22A31A6NKX4 558 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 ADAP00813 363 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 GLT8D1Q68CQ7 371 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 CPNE2Q96FN4 548 aaPredicted RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 DTD2Q96FN9 168 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 MTHFD2LQ9H903 347 aaPredicted RBP17.29■□□□□ 0.36
COL18A1-204ENST00000400337 SUSD2Q9UGT4 822 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 IL20RAQ9UHF4 553 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 SCML1Q9UN30 329 aa17.29■□□□□ 0.36
COL18A1-204ENST00000400337 PRRC2BQ5JSZ5 2229 aaKnown RBP17.28■□□□□ 0.36
COL18A1-204ENST00000400337 TRAV6A0A075B6T7 132 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 APOC1P02654 83 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 GBX1Q14549 363 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 ALG10BQ5I7T1 473 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 NRMQ8IXM6 262 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 CREB3L4Q8TEY5 395 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 FGF13Q92913 245 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 C3orf30Q96M34 536 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 OR1F2PQ96R84 312 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 SORBS1Q9BX66 1292 aaKnown RBP17.28■□□□□ 0.36
COL18A1-204ENST00000400337 ACPTQ9BZG2 426 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 PREBQ9HCU5 417 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 CD8B2A6NJW9 211 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 L7N2F9 121 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 LAMTOR5O43504 91 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 SLC19A2O60779 497 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 ADAMTS4O75173 837 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 ZNF217O75362 1048 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 CD8BP10966 210 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 MYF6P23409 242 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 RORAP35398 523 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 PER3P56645 1201 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 VAMP2P63027 116 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 TSPYL5Q86VY4 417 aaPredicted RBP17.28■□□□□ 0.36
COL18A1-204ENST00000400337 ACBD7Q8N6N7 88 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 OR4C15Q8NGM1 316 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 MYLIPQ8WY64 445 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 CCDC120Q96HB5 630 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.28■□□□□ 0.361e-7■■■■□ 21.1
COL18A1-204ENST00000400337 FTSJ1Q9UET6 329 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 HSPE1-MOB4S4R3N1 261 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 FOXD2O60548 495 aaPredicted RBP17.28■□□□□ 0.36
COL18A1-204ENST00000400337 SCGB1D2O95969 90 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 RETP07949 1114 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 INHBCP55103 352 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 CLDN2P57739 230 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.28■□□□□ 0.36
COL18A1-204ENST00000400337 NADSYN1Q6IA69 706 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 LARP4Q71RC2 724 aaKnown RBP eCLIP17.28■□□□□ 0.368e-8■■■■□ 20.6
COL18A1-204ENST00000400337 WDR20Q8TBZ3 569 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 POLE4Q9NR33 117 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 ARMC1Q9NVT9 282 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 C14orf119Q9NWQ9 140 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 TMEM181Q9P2C4 612 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 C13orf42A0A1B0GVH6 325 aa17.28■□□□□ 0.36
COL18A1-204ENST00000400337 FARS2O95363 451 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms