RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 CASP14P31944 242 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 RPL9P32969 192 aaKnown RBP4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 CDX1P47902 265 aaPredicted RBP4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 OSTNP61366 133 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 TFAMQ00059 246 aaKnown RBP4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 OPCMLQ14982 345 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 RBBP7Q16576 425 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 CDO1Q16878 200 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 TMEM30BQ3MIR4 351 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 OR4C11Q6IEV9 310 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 TTC27Q6P3X3 843 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 TRIM65Q6PJ69 517 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 SLC25A47Q6Q0C1 308 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 PRSS55Q6UWB4 352 aaPredicted RBP4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 NIPA2Q8N8Q9 360 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 SPC24Q8NBT2 197 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 CCDC112Q8NEF3 446 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 OR5B17Q8NGF7 314 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 OR8K1Q8NGG5 319 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 SPATA18Q8TC71 538 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 APOBEC4Q8WW27 367 aaKnown RBP4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 DNASE1L2Q92874 299 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 AZIN2Q96A70 460 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 DUX3Q96PT4 197 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 PANX2Q96RD6 677 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 CRACR2AQ9BSW2 395 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 KRTAP2-2Q9BYT5 123 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 MTMR12Q9C0I1 747 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 SDCBP2Q9H190 292 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 GANQ9H2C0 597 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 CYP3A43Q9HB55 503 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 MAN2C1Q9NTJ4 1040 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 C2orf42Q9NWW7 574 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 AIPL1Q9NZN9 384 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 HES2Q9Y543 173 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 DENND4CQ5VZ89 1909 aa4.33□□□□□ -1.72
HMGB3P19-201ENST00000403971 PATJQ8NI35 1801 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 A4D1N5 150 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ARL5CA6NH57 179 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 KHDRBS3O75525 346 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 SLC2A2P11168 524 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 P4HA1P13674 534 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 FERP16591 822 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ANXA13P27216 316 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 SSTR1P30872 391 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 LEPRP48357 1165 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 CCL23P55773 120 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 POLR2FP61218 127 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 YWHAEP62258 255 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 SNRPD1P62314 119 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 NOP14P78316 857 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 SULT2A1Q06520 285 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 NFE2L1Q14494 772 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 TMEM187Q14656 261 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 TEAD2Q15562 447 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ZNF74Q16587 644 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ADAMTSL4-AS1Q5T5F5 129 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 PSRC1Q6PGN9 363 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 MSANTD1Q6ZTZ1 278 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 OTOAQ7RTW8 1153 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 CROCCP3Q8IVE0 287 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 LRRC8AQ8IWT6 810 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 OR5AP2Q8NGF4 316 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 URGCPQ8TCY9 931 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 SMAP2Q8WU79 429 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 METTL21AQ8WXB1 218 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 SHC3Q92529 594 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ATP6V1E2Q96A05 226 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 GMPPAQ96IJ6 420 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 HPDLQ96IR7 371 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ZNF560Q96MR9 790 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 TMEM175Q9BSA9 504 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 MRPL9Q9BYD2 267 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 WDR13Q9H1Z4 485 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 UBE2TQ9NPD8 197 aaPredicted RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ATAD3AQ9NVI7 634 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 ZNHIT6Q9NWK9 470 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 GDAP2Q9NXN4 497 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 SEPT10Q9P0V9 454 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 TMEM181Q9P2C4 612 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 CACNG5Q9UF02 275 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 DNAJC12Q9UKB3 198 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 RUVBL2Q9Y230 463 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 BZW2Q9Y6E2 419 aaKnown RBP4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 PLXNA4Q9HCM2 1894 aa4.32□□□□□ -1.72
HMGB3P19-201ENST00000403971 MYO7AQ13402 2215 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 TRBV4-1A0A0J9YWV2 114 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 F8VZ95 297 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 H3BMM5 538 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 NR5A2O00482 541 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 ZNF821O75541 412 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 CLDN1O95832 211 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 PTMAP06454 111 aaKnown RBP4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 ZNF26P17031 533 aaPredicted RBP4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 SFTPDP35247 375 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 DEKP35659 375 aaKnown RBP4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 CETN2P41208 172 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 TAF6P49848 677 aa4.31□□□□□ -1.72
HMGB3P19-201ENST00000403971 KLK7P49862 253 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms