RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 CNOT11Q9UKZ1 510 aaKnown RBP13.2□□□□□ -0.3
VMP1-206ENST00000587945 CHCHD2Q9Y6H1 151 aaPredicted RBP13.2□□□□□ -0.3
VMP1-206ENST00000587945 DCHS2Q6V1P9 2916 aa13.2□□□□□ -0.3
VMP1-206ENST00000587945 POLQO75417 2590 aa13.2□□□□□ -0.3
VMP1-206ENST00000587945 A0A1B0GTL3 188 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 FIGNL2A6NMB9 653 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 POC1B-GALNT4F8VUJ3 575 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 STX16-NPEPL1H3BU86 382 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 STX16O14662 325 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 SUSD5O60279 629 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 SMIM24O75264 130 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 SEMA3DO95025 777 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 TSPAN8P19075 237 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 SERPINB3P29508 390 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 ADH7P40394 386 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 TRPC1P48995 793 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 WHAMMP3Q1A5X7 153 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 BICRALQ6AI39 1079 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 OR52E8Q6IFG1 317 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 METTL2BQ6P1Q9 378 aaKnown RBP13.19□□□□□ -0.3
VMP1-206ENST00000587945 B3GNT6Q6ZMB0 384 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 MMP21Q8N119 569 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 ZNF441Q8N8Z8 693 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 OR4F6Q8NGB9 312 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 NTMT1Q9BV86 223 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 SLC6A15Q9H2J7 730 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 CXorf21Q9HAI6 301 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 FARSBQ9NSD9 589 aaKnown RBP13.19□□□□□ -0.3
VMP1-206ENST00000587945 CNIH4Q9P003 139 aa13.19□□□□□ -0.3
VMP1-206ENST00000587945 BOKQ9UMX3 212 aaPredicted RBP13.19□□□□□ -0.3
VMP1-206ENST00000587945 A0A0G2JNJ9 132 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 C2orf92A0A1B0GVN3 265 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 OR6C76A6NM76 312 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 TRIM49D1C9J1S8 452 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 HCN1O60741 890 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 NT5EP21589 574 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 PIK3R1P27986 724 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 MSX1P28360 303 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 ECHS1P30084 290 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 GALNSP34059 522 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 SERPINB9P50453 376 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 XKP51811 444 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 CDH13P55290 713 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 FBXW4P57775 412 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 IFT88Q13099 833 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 NTRK2Q16620 822 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 C1orf185Q5T7R7 199 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 WLSQ5T9L3 541 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 MILR1Q7Z6M3 343 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 LIX1LQ8IVB5 337 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 TAGAPQ8N103 731 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 MMGT1Q8N4V1 131 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 OR4K14Q8NGD5 310 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 DCAKDQ8WVC6 231 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 ZNF592Q92610 1267 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 DIO2Q92813 273 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 SARAFQ96BY9 339 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 FMO2Q99518 471 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 DOHHQ9BU89 302 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 Q9UFV3 132 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 IKBKGQ9Y6K9 419 aa13.18□□□□□ -0.3
VMP1-206ENST00000587945 CACNA1CQ13936 2221 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 ZNF407Q9C0G0 2248 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 RPS17P08708 135 aaKnown RBP13.17□□□□□ -0.3
VMP1-206ENST00000587945 SBK3P0C264 359 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 ZFP36L2P47974 494 aaKnown RBP13.17□□□□□ -0.3
VMP1-206ENST00000587945 FUT7Q11130 342 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 TSNAXIP1Q2TAA8 658 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 CCNYL2Q5T2Q4 361 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 HLA-DQA1Q5Y7H0 255 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 LETMD1Q6P1Q0 360 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 TAOK1Q7L7X3 1001 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 CDH24Q86UP0 819 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 GALNT12Q8IXK2 581 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 DMRTC2Q8IXT2 367 aaPredicted RBP13.17□□□□□ -0.3
VMP1-206ENST00000587945 DND1Q8IYX4 353 aaKnown RBP13.17□□□□□ -0.3
VMP1-206ENST00000587945 PRR22Q8IZ63 422 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 LRRC25Q8N386 305 aaPredicted RBP13.17□□□□□ -0.3
VMP1-206ENST00000587945 METTL4Q8N3J2 472 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 ZNF615Q8N8J6 731 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 MRPL57Q9BQC6 102 aaKnown RBP13.17□□□□□ -0.3
VMP1-206ENST00000587945 OR10A5Q9H207 317 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 ELOVL6Q9H5J4 265 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 ADAM29Q9UKF5 820 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 TMCO1Q9UM00 188 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 SLC12A4Q9UP95 1085 aa13.17□□□□□ -0.3
VMP1-206ENST00000587945 TEP1Q99973 2627 aaKnown RBP13.17□□□□□ -0.3
VMP1-206ENST00000587945 CCDC168Q8NDH2 2452 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 A8MT66 165 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 WDR1O75083 606 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 TRIM3O75382 744 aaPredicted RBP13.16□□□□□ -0.3
VMP1-206ENST00000587945 KRT38O76015 456 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 PDYNP01213 254 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 COL6A2P12110 1019 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 CPMP14384 443 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 PORP16435 677 aaPredicted RBP13.16□□□□□ -0.3
VMP1-206ENST00000587945 CAPN3P20807 821 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 S1PR1P21453 382 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 GDF1P27539 372 aa13.16□□□□□ -0.3
VMP1-206ENST00000587945 FEN1P39748 380 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms