RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 KDM3BQ7LBC6 1761 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 ZNF609O15014 1411 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 FKBP4Q02790 459 aaKnown RBP eCLIP6.37□□□□□ -1.39
SNCA-213ENST00000618500 AKAP4Q5JQC9 854 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 USPL1Q5W0Q7 1092 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 HACL1Q9UJ83 578 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 LAMB2P55268 1798 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 DUOX1Q9NRD9 1551 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 UTRNP46939 3433 aa6.37□□□□□ -1.39
SNCA-213ENST00000618500 ST20-MTHFSA0A0A6YYL1 179 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 FZD9O00144 591 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 BRPF1P55201 1214 aaPredicted RBP6.36□□□□□ -1.39
SNCA-213ENST00000618500 DEFB115Q30KQ5 88 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 SLC52A2Q9HAB3 445 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 MKRN1Q9UHC7 482 aaKnown RBP6.36□□□□□ -1.39
SNCA-213ENST00000618500 TLL2Q9Y6L7 1015 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 EIF5P55010 431 aaKnown RBP6.36□□□□□ -1.39
SNCA-213ENST00000618500 ERFEQ4G0M1 354 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 TEX13AQ9BXU3 409 aaPredicted RBP6.36□□□□□ -1.39
SNCA-213ENST00000618500 FBLN1P23142 703 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 CCDC93Q567U6 631 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 GPC2Q8N158 579 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 MASTLQ96GX5 879 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 PSMD1Q99460 953 aa6.36□□□□□ -1.39
SNCA-213ENST00000618500 COL3A1P02461 1466 aaPredicted RBP6.35□□□□□ -1.39
SNCA-213ENST00000618500 C1orf141Q5JVX7 400 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 CC2D2BQ6DHV5 1058 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 ZNF530Q6P9A1 599 aaPredicted RBP6.35□□□□□ -1.39
SNCA-213ENST00000618500 PGAP2Q9UHJ9 254 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 AKAP11Q9UKA4 1901 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 SRGNP10124 158 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 PRPF38BQ5VTL8 546 aaKnown RBP6.35□□□□□ -1.39
SNCA-213ENST00000618500 USP50Q70EL3 339 aaPredicted RBP6.35□□□□□ -1.39
SNCA-213ENST00000618500 RTKN2Q8IZC4 609 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 SIN3AQ96ST3 1273 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 NUP98P52948 1817 aa6.35□□□□□ -1.39
SNCA-213ENST00000618500 IL6STP40189 918 aaPredicted RBP6.34□□□□□ -1.39
SNCA-213ENST00000618500 MTHFSP49914 203 aa6.34□□□□□ -1.39
SNCA-213ENST00000618500 PRR5LQ6MZQ0 368 aa6.34□□□□□ -1.39
SNCA-213ENST00000618500 GCC1Q96CN9 775 aa6.34□□□□□ -1.39
SNCA-213ENST00000618500 KIF7Q2M1P5 1343 aa6.34□□□□□ -1.39
SNCA-213ENST00000618500 COL4A5P29400 1685 aa6.34□□□□□ -1.39
SNCA-213ENST00000618500 HEG1Q9ULI3 1381 aa6.34□□□□□ -1.39
SNCA-213ENST00000618500 EPHX2P34913 555 aa6.34□□□□□ -1.39
SNCA-213ENST00000618500 REM2Q8IYK8 340 aaPredicted RBP6.34□□□□□ -1.39
SNCA-213ENST00000618500 NPR1P16066 1061 aa6.33□□□□□ -1.4
SNCA-213ENST00000618500 ST5P78524 1137 aa6.33□□□□□ -1.4
SNCA-213ENST00000618500 CLEC4GQ6UXB4 293 aa6.33□□□□□ -1.4
SNCA-213ENST00000618500 DDX21Q9NR30 783 aaKnown RBP eCLIP6.33□□□□□ -1.4
SNCA-213ENST00000618500 ZNF541Q9H0D2 1346 aa6.33□□□□□ -1.4
SNCA-213ENST00000618500 PAPPA2Q9BXP8 1791 aa6.33□□□□□ -1.4
SNCA-213ENST00000618500 DDNO94850 711 aaPredicted RBP6.33□□□□□ -1.4
SNCA-213ENST00000618500 PRPF40BQ6NWY9 871 aaKnown RBP6.33□□□□□ -1.4
SNCA-213ENST00000618500 DNAJC10Q8IXB1 793 aa6.33□□□□□ -1.4
SNCA-213ENST00000618500 ZNF646O15015 1829 aaPredicted RBP6.33□□□□□ -1.4
SNCA-213ENST00000618500 CEMIPQ8WUJ3 1361 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 RNMTO43148 476 aaKnown RBP6.32□□□□□ -1.4
SNCA-213ENST00000618500 NOM1Q5C9Z4 860 aaKnown RBP6.32□□□□□ -1.4
SNCA-213ENST00000618500 CNTROBQ8N137 903 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 CAPNS2Q96L46 248 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 MCOLN1Q9GZU1 580 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 TIMELESSQ9UNS1 1208 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 CAMTA2O94983 1202 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 STARD3NLO95772 234 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 SLC4A2P04920 1241 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 POTEIP0CG38 1075 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 POTEJP0CG39 1038 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 IL13P35225 146 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 NFATC2IPQ8NCF5 419 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 ZBTB1Q9Y2K1 713 aa6.32□□□□□ -1.4
SNCA-213ENST00000618500 C21orf2O43822 256 aa6.31□□□□□ -1.4
SNCA-213ENST00000618500 IARSP41252 1262 aaKnown RBP6.31□□□□□ -1.4
SNCA-213ENST00000618500 TBC1D9BQ66K14 1250 aa6.31□□□□□ -1.4
SNCA-213ENST00000618500 ZC3H15Q8WU90 426 aaKnown RBP6.31□□□□□ -1.4
SNCA-213ENST00000618500 CRY2Q49AN0 593 aa6.31□□□□□ -1.4
SNCA-213ENST00000618500 CNBD1Q8NA66 436 aa6.31□□□□□ -1.4
SNCA-213ENST00000618500 BEGAINQ9BUH8 593 aa6.31□□□□□ -1.4
SNCA-213ENST00000618500 NPC1L1Q9UHC9 1359 aa6.3□□□□□ -1.4
SNCA-213ENST00000618500 ALDH1B1P30837 517 aa6.3□□□□□ -1.4
SNCA-213ENST00000618500 HOXA10P31260 410 aaPredicted RBP6.3□□□□□ -1.4
SNCA-213ENST00000618500 PKN2Q16513 984 aaKnown RBP6.3□□□□□ -1.4
SNCA-213ENST00000618500 RNF123Q5XPI4 1314 aa6.29□□□□□ -1.4
SNCA-213ENST00000618500 PTCD1O75127 700 aaKnown RBP6.29□□□□□ -1.4
SNCA-213ENST00000618500 RTFDC1Q9BY42 306 aaPredicted RBP6.29□□□□□ -1.4
SNCA-213ENST00000618500 ZNF219Q9P2Y4 722 aaPredicted RBP6.29□□□□□ -1.4
SNCA-213ENST00000618500 CCDC85CA6NKD9 419 aa6.29□□□□□ -1.4
SNCA-213ENST00000618500 GPR101Q96P66 508 aaPredicted RBP6.29□□□□□ -1.4
SNCA-213ENST00000618500 ADARB2Q9NS39 739 aaKnown RBP6.29□□□□□ -1.4
SNCA-213ENST00000618500 ZNF652Q9Y2D9 606 aa6.29□□□□□ -1.4
SNCA-213ENST00000618500 LMOD1P29536 600 aaPredicted RBP6.28□□□□□ -1.4
SNCA-213ENST00000618500 CST9Q5W186 159 aa6.28□□□□□ -1.4
SNCA-213ENST00000618500 SAPCD2Q86UD0 394 aa6.28□□□□□ -1.4
SNCA-213ENST00000618500 ZNF622Q969S3 477 aaKnown RBP eCLIP6.28□□□□□ -1.4
SNCA-213ENST00000618500 SETDB2Q96T68 719 aa6.28□□□□□ -1.4
SNCA-213ENST00000618500 CFHR5Q9BXR6 569 aa6.28□□□□□ -1.4
SNCA-213ENST00000618500 SCNN1DP51172 638 aa6.28□□□□□ -1.4
SNCA-213ENST00000618500 NOGQ13253 232 aa6.28□□□□□ -1.4
SNCA-213ENST00000618500 EIF6P56537 245 aaKnown RBP6.28□□□□□ -1.4
SNCA-213ENST00000618500 NEUROD1Q13562 356 aa6.28□□□□□ -1.4
SNCA-213ENST00000618500 NECTIN2Q92692 538 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms