RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 DZIP3Q86Y13 1208 aaKnown RBP11.35□□□□□ -0.59
SMAD4-217ENST00000611848 C8orf58Q8NAV2 365 aa11.35□□□□□ -0.59
SMAD4-217ENST00000611848 TBC1D2BQ9UPU7 963 aa11.35□□□□□ -0.59
SMAD4-217ENST00000611848 RGL2O15211 777 aa11.34□□□□□ -0.59
SMAD4-217ENST00000611848 PDIA6Q15084 440 aa11.34□□□□□ -0.59
SMAD4-217ENST00000611848 SPINK5Q9NQ38 1064 aaPredicted RBP11.34□□□□□ -0.59
SMAD4-217ENST00000611848 DDX21Q9NR30 783 aaKnown RBP eCLIP11.34□□□□□ -0.59
SMAD4-217ENST00000611848 CACNA1FO60840 1977 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 E9PSI1 815 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 ELL2O00472 640 aaPredicted RBP11.33□□□□□ -0.6
SMAD4-217ENST00000611848 CAMTA2O94983 1202 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 MMP10P09238 476 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 MYL6BP14649 208 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 CLEC4GQ6UXB4 293 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 NECTIN2Q92692 538 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 BCL2L12Q9HB09 334 aa11.33□□□□□ -0.6
SMAD4-217ENST00000611848 DBF4Q9UBU7 674 aaPredicted RBP11.33□□□□□ -0.6
SMAD4-217ENST00000611848 SCN7AQ01118 1682 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 BCORQ6W2J9 1755 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 ERVV-1B6SEH8 477 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 C1QBPQ07021 282 aaKnown RBP11.32□□□□□ -0.6
SMAD4-217ENST00000611848 TWISTNBQ3B726 338 aaPredicted RBP11.32□□□□□ -0.6
SMAD4-217ENST00000611848 CCDC30Q5VVM6 783 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 LRP10Q7Z4F1 713 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 TSPYL6Q8N831 410 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 CHPF2Q9P2E5 772 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 ZNF652Q9Y2D9 606 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 PARP3Q9Y6F1 533 aa11.32□□□□□ -0.6
SMAD4-217ENST00000611848 TM4SF1P30408 202 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 SLFN5Q08AF3 891 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 PROSER3Q2NL68 480 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 KIF6Q6ZMV9 814 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 HYPKQ9NX55 129 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 RCAN3Q9UKA8 241 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 NUP98P52948 1817 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 ANXA1P04083 346 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 RRP1P56182 461 aaKnown RBP11.31□□□□□ -0.6
SMAD4-217ENST00000611848 EXOSC9Q06265 439 aaKnown RBP11.31□□□□□ -0.6
SMAD4-217ENST00000611848 NFIXQ14938 502 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 TTLL7Q6ZT98 887 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 CDCA7LQ96GN5 454 aa11.31□□□□□ -0.6
SMAD4-217ENST00000611848 MAP3K15Q6ZN16 1313 aa11.3□□□□□ -0.6
SMAD4-217ENST00000611848 POLRMTO00411 1230 aaKnown RBP11.3□□□□□ -0.6
SMAD4-217ENST00000611848 COPS6Q7L5N1 327 aa11.3□□□□□ -0.6
SMAD4-217ENST00000611848 SYT17Q9BSW7 474 aa11.3□□□□□ -0.6
SMAD4-217ENST00000611848 FHDC1Q9C0D6 1143 aaPredicted RBP11.3□□□□□ -0.6
SMAD4-217ENST00000611848 CD2APQ9Y5K6 639 aa11.3□□□□□ -0.6
SMAD4-217ENST00000611848 VAMP4O75379 141 aa11.29□□□□□ -0.6
SMAD4-217ENST00000611848 DDR1Q08345 913 aa11.29□□□□□ -0.6
SMAD4-217ENST00000611848 TBC1D9BQ66K14 1250 aa11.29□□□□□ -0.6
SMAD4-217ENST00000611848 XAGE3Q8WTP9 111 aa11.29□□□□□ -0.6
SMAD4-217ENST00000611848 SETDB2Q96T68 719 aa11.29□□□□□ -0.6
SMAD4-217ENST00000611848 STK31Q9BXU1 1019 aa11.29□□□□□ -0.6
SMAD4-217ENST00000611848 AFDNP55196 1824 aaKnown RBP11.29□□□□□ -0.6
SMAD4-217ENST00000611848 SERPINB2P05120 415 aa11.28□□□□□ -0.6
SMAD4-217ENST00000611848 AIMP1Q12904 312 aaKnown RBP11.28□□□□□ -0.6
SMAD4-217ENST00000611848 HLFQ16534 295 aa11.28□□□□□ -0.6
SMAD4-217ENST00000611848 B4GALNT3Q6L9W6 998 aa11.28□□□□□ -0.6
SMAD4-217ENST00000611848 BICDL1Q6ZP65 573 aa11.28□□□□□ -0.6
SMAD4-217ENST00000611848 TRMT2AQ8IZ69 625 aaKnown RBP11.28□□□□□ -0.6
SMAD4-217ENST00000611848 KLHL34Q8N239 644 aa11.28□□□□□ -0.6
SMAD4-217ENST00000611848 CARMIL3Q8ND23 1372 aa11.28□□□□□ -0.6
SMAD4-217ENST00000611848 HSP90AB3PQ58FF7 597 aa11.27□□□□□ -0.6
SMAD4-217ENST00000611848 GIGYF2Q6Y7W6 1299 aaKnown RBP11.27□□□□□ -0.6
SMAD4-217ENST00000611848 ANKRD13DQ6ZTN6 518 aa11.27□□□□□ -0.6
SMAD4-217ENST00000611848 ZBTB3Q9H5J0 574 aa11.27□□□□□ -0.6
SMAD4-217ENST00000611848 KIF13BQ9NQT8 1826 aa11.27□□□□□ -0.61
SMAD4-217ENST00000611848 NRXN2Q9P2S2 1712 aa11.27□□□□□ -0.61
SMAD4-217ENST00000611848 ATP10DQ9P241 1426 aa11.27□□□□□ -0.61
SMAD4-217ENST00000611848 PLBD2Q8NHP8 589 aa11.27□□□□□ -0.61
SMAD4-217ENST00000611848 NIP7Q9Y221 180 aaKnown RBP eCLIP11.27□□□□□ -0.61
SMAD4-217ENST00000611848 C10orf71Q711Q0 1435 aa11.26□□□□□ -0.61
SMAD4-217ENST00000611848 CT47B1P0C2W7 299 aaPredicted RBP11.26□□□□□ -0.61
SMAD4-217ENST00000611848 TGFB2P61812 414 aa11.26□□□□□ -0.61
SMAD4-217ENST00000611848 ZNF428Q96B54 188 aa11.26□□□□□ -0.61
SMAD4-217ENST00000611848 PHAXQ9H814 394 aaKnown RBP11.26□□□□□ -0.61
SMAD4-217ENST00000611848 DDX58O95786 925 aaKnown RBP11.25□□□□□ -0.61
SMAD4-217ENST00000611848 ZNF34Q8IZ26 560 aa11.25□□□□□ -0.61
SMAD4-217ENST00000611848 ANKRD36CQ5JPF3 1778 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 TCERG1O14776 1098 aaKnown RBP11.24□□□□□ -0.61
SMAD4-217ENST00000611848 NPHP1O15259 732 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 TCIRG1Q13488 830 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 PARP10Q53GL7 1025 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 TPTE2Q6XPS3 522 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 NBPF5PQ86XG9 351 aaPredicted RBP11.24□□□□□ -0.61
SMAD4-217ENST00000611848 CNBD1Q8NA66 436 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 NYXQ9GZU5 481 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 RBM19Q9Y4C8 960 aaKnown RBP11.24□□□□□ -0.61
SMAD4-217ENST00000611848 ST5P78524 1137 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 PRR5LQ6MZQ0 368 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 RIC3Q7Z5B4 369 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 NLGN2Q8NFZ4 835 aa11.24□□□□□ -0.61
SMAD4-217ENST00000611848 GPTP24298 496 aa11.23□□□□□ -0.61
SMAD4-217ENST00000611848 FLIIQ13045 1269 aa11.23□□□□□ -0.61
SMAD4-217ENST00000611848 PPP1R42Q7Z4L9 355 aa11.23□□□□□ -0.61
SMAD4-217ENST00000611848 CCDC136Q96JN2 1154 aa11.23□□□□□ -0.61
SMAD4-217ENST00000611848 BRIP1Q9BX63 1249 aa11.23□□□□□ -0.61
SMAD4-217ENST00000611848 PDZRN3Q9UPQ7 1066 aa11.23□□□□□ -0.61
SMAD4-217ENST00000611848 UBN2Q6ZU65 1347 aa11.23□□□□□ -0.61
SMAD4-217ENST00000611848 ARFGEF2Q9Y6D5 1785 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms