RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	SERPINB2	P05120	415 aa		11.48	□□□□□ -0.57
SSBP4-208	ENST00000600628	CALD1	Q05682	793 aa	Known RBP	11.48	□□□□□ -0.57
SSBP4-208	ENST00000600628	HLF	Q16534	295 aa		11.48	□□□□□ -0.57
SSBP4-208	ENST00000600628	PROSER3	Q2NL68	480 aa		11.48	□□□□□ -0.57
SSBP4-208	ENST00000600628	ZNF521	Q96K83	1311 aa		11.48	□□□□□ -0.57
SSBP4-208	ENST00000600628	ARFGEF2	Q9Y6D5	1785 aa		11.48	□□□□□ -0.57
SSBP4-208	ENST00000600628	CACNA1F	O60840	1977 aa		11.48	□□□□□ -0.57
SSBP4-208	ENST00000600628	RIC1	Q4ADV7	1423 aa		11.47	□□□□□ -0.57
SSBP4-208	ENST00000600628	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.47	□□□□□ -0.57
SSBP4-208	ENST00000600628	MAP3K15	Q6ZN16	1313 aa		11.47	□□□□□ -0.57
SSBP4-208	ENST00000600628	CCER2	I3L3R5	266 aa		11.47	□□□□□ -0.57
SSBP4-208	ENST00000600628	TTLL7	Q6ZT98	887 aa		11.47	□□□□□ -0.57
SSBP4-208	ENST00000600628	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
SSBP4-208	ENST00000600628		A0A0G2JLW4	131 aa		11.46	□□□□□ -0.57
SSBP4-208	ENST00000600628	DPEP1	P16444	411 aa		11.46	□□□□□ -0.57
SSBP4-208	ENST00000600628	PRR5L	Q6MZQ0	368 aa		11.46	□□□□□ -0.57
SSBP4-208	ENST00000600628	WDR63	Q8IWG1	891 aa		11.46	□□□□□ -0.57
SSBP4-208	ENST00000600628	ZNF34	Q8IZ26	560 aa		11.46	□□□□□ -0.57
SSBP4-208	ENST00000600628	SBF1	O95248	1867 aa		11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	DUSP27	Q5VZP5	1158 aa		11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	NPM2	Q86SE8	214 aa	Known RBP	11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	C8orf58	Q8NAV2	365 aa		11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	SETDB2	Q96T68	719 aa		11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	BRIP1	Q9BX63	1249 aa		11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	WWC3	Q9ULE0	1092 aa		11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.45	□□□□□ -0.58
SSBP4-208	ENST00000600628	ADCY9	O60503	1353 aa		11.44	□□□□□ -0.58
SSBP4-208	ENST00000600628	UBN2	Q6ZU65	1347 aa		11.44	□□□□□ -0.58
SSBP4-208	ENST00000600628	ZNF652	Q9Y2D9	606 aa		11.44	□□□□□ -0.58
SSBP4-208	ENST00000600628	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	FER1L6	Q2WGJ9	1857 aa		11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	ANXA1	P04083	346 aa		11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	TSPYL6	Q8N831	410 aa		11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	CHPF2	Q9P2E5	772 aa		11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	PDZRN3	Q9UPQ7	1066 aa		11.43	□□□□□ -0.58
SSBP4-208	ENST00000600628	SLX4	Q8IY92	1834 aa		11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	MYL6B	P14649	208 aa		11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	EIF2S2	P20042	333 aa	Known RBP	11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	HDGFL1	Q5TGJ6	251 aa		11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	BICDL1	Q6ZP65	573 aa		11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	COPS6	Q7L5N1	327 aa		11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	PIM2	Q9P1W9	311 aa		11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	DBF4	Q9UBU7	674 aa	Predicted RBP	11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	BCS1L	Q9Y276	419 aa		11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	LAS1L	Q9Y4W2	734 aa	Known RBP	11.42	□□□□□ -0.58
SSBP4-208	ENST00000600628	LAMB2	P55268	1798 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	FANCI	Q9NVI1	1328 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	NTSR2	O95665	410 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	CHRNA5	P30532	468 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	CRY2	Q49AN0	593 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	FAM9B	Q8IZU0	186 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	CNBD1	Q8NA66	436 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	XAGE3	Q8WTP9	111 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	TSR2	Q969E8	191 aa	Known RBP	11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	HYPK	Q9NX55	129 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	SNED1	Q8TER0	1413 aa		11.41	□□□□□ -0.58
SSBP4-208	ENST00000600628	SRGN	P10124	158 aa		11.4	□□□□□ -0.58
SSBP4-208	ENST00000600628	PDE6B	P35913	854 aa		11.4	□□□□□ -0.58
SSBP4-208	ENST00000600628	TRIM28	Q13263	835 aa	Known RBP	11.4	□□□□□ -0.58
SSBP4-208	ENST00000600628	TCIRG1	Q13488	830 aa		11.4	□□□□□ -0.58
SSBP4-208	ENST00000600628	TPTE2	Q6XPS3	522 aa		11.4	□□□□□ -0.58
SSBP4-208	ENST00000600628	KIF6	Q6ZMV9	814 aa		11.4	□□□□□ -0.58
SSBP4-208	ENST00000600628	ZBTB3	Q9H5J0	574 aa		11.4	□□□□□ -0.58
SSBP4-208	ENST00000600628	ABCC12	Q96J65	1359 aa		11.4	□□□□□ -0.59
SSBP4-208	ENST00000600628	DALRD3	Q5D0E6	543 aa	Known RBP	11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	SLC10A5	Q5PT55	438 aa		11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	SUSD4	Q5VX71	490 aa		11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	DDX60	Q8IY21	1712 aa	Known RBP	11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	TRMT2A	Q8IZ69	625 aa	Known RBP	11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	PLBD2	Q8NHP8	589 aa		11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	C7orf43	Q8WVR3	580 aa		11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	NECTIN2	Q92692	538 aa		11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	ISCA1	Q9BUE6	129 aa		11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	DICER1	Q9UPY3	1922 aa	Known RBP	11.39	□□□□□ -0.59
SSBP4-208	ENST00000600628	RNF123	Q5XPI4	1314 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	CACNA1S	Q13698	1873 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	SENP3-EIF4A1	A0A087X0R7	540 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628		H0YIN7	160 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	VAMP4	O75379	141 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	PARP10	Q53GL7	1025 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	STYK1	Q6J9G0	422 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	ANKRD13D	Q6ZTN6	518 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	NLRP10	Q86W26	655 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	C2CD5	Q86YS7	1000 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	CHMP4A	Q9BY43	222 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	NYX	Q9GZU5	481 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	CCDC88A	Q3V6T2	1871 aa		11.38	□□□□□ -0.59
SSBP4-208	ENST00000600628	ELL2	O00472	640 aa	Predicted RBP	11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	HOXA10	P31260	410 aa	Predicted RBP	11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	ST5	P78524	1137 aa		11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	TWISTNB	Q3B726	338 aa	Predicted RBP	11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	HSP90AB3P	Q58FF7	597 aa		11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	CCDC30	Q5VVM6	783 aa		11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	ARHGAP27	Q6ZUM4	889 aa		11.37	□□□□□ -0.59
SSBP4-208	ENST00000600628	CCDC24	Q8N4L8	307 aa		11.37	□□□□□ -0.59

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