RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 BBXQ8WY36 941 aaPredicted RBP9.96□□□□□ -0.82
CHD3-213ENST00000571249 OTUD5Q96G74 571 aa9.96□□□□□ -0.82
CHD3-213ENST00000571249 HHIPL1Q96JK4 782 aa9.96□□□□□ -0.82
CHD3-213ENST00000571249 SAGE1Q9NXZ1 904 aa9.96□□□□□ -0.82
CHD3-213ENST00000571249 SPDYE4A6NLX3 237 aa9.95□□□□□ -0.82
CHD3-213ENST00000571249 KIF23Q02241 960 aaPredicted RBP9.95□□□□□ -0.82
CHD3-213ENST00000571249 ZNF408Q9H9D4 720 aa9.95□□□□□ -0.82
CHD3-213ENST00000571249 DAXXQ9UER7 740 aaPredicted RBP9.95□□□□□ -0.82
CHD3-213ENST00000571249 SMG6Q86US8 1419 aaKnown RBP9.95□□□□□ -0.82
CHD3-213ENST00000571249 TRPM7Q96QT4 1865 aa9.95□□□□□ -0.82
CHD3-213ENST00000571249 INSRP06213 1382 aa9.94□□□□□ -0.82
CHD3-213ENST00000571249 FAM155AB1AL88 458 aaPredicted RBP9.94□□□□□ -0.82
CHD3-213ENST00000571249 ZPR1O75312 459 aa9.94□□□□□ -0.82
CHD3-213ENST00000571249 GLIS2Q9BZE0 524 aaPredicted RBP9.94□□□□□ -0.82
CHD3-213ENST00000571249 BCL2L12Q9HB09 334 aa9.94□□□□□ -0.82
CHD3-213ENST00000571249 H0YGN5 161 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 FZD9O00144 591 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 RRS1Q15050 365 aaKnown RBP9.93□□□□□ -0.82
CHD3-213ENST00000571249 PRPF40BQ6NWY9 871 aaKnown RBP9.93□□□□□ -0.82
CHD3-213ENST00000571249 INTS5Q6P9B9 1019 aaKnown RBP9.93□□□□□ -0.82
CHD3-213ENST00000571249 OLFM4Q6UX06 510 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 DLK2Q6UY11 383 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 CHRDL2Q6WN34 429 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 IFNLR1Q8IU57 520 aaPredicted RBP9.93□□□□□ -0.82
CHD3-213ENST00000571249 GPC2Q8N158 579 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 GJA3Q9Y6H8 435 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 MON2Q7Z3U7 1717 aa9.93□□□□□ -0.82
CHD3-213ENST00000571249 PTCD1O75127 700 aaKnown RBP9.92□□□□□ -0.82
CHD3-213ENST00000571249 PKN2Q16513 984 aaKnown RBP9.92□□□□□ -0.82
CHD3-213ENST00000571249 RBM27Q9P2N5 1060 aaKnown RBP9.92□□□□□ -0.82
CHD3-213ENST00000571249 COL5A3P25940 1745 aaPredicted RBP9.92□□□□□ -0.82
CHD3-213ENST00000571249 HTTP42858 3142 aa9.92□□□□□ -0.82
CHD3-213ENST00000571249 SLX4Q8IY92 1834 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 NRXN2Q9P2S2 1712 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 TTC28Q96AY4 2481 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 EN2P19622 333 aaPredicted RBP9.91□□□□□ -0.82
CHD3-213ENST00000571249 SCNN1DP51172 638 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 HUNKP57058 714 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 ZNF296Q8WUU4 475 aaPredicted RBP9.91□□□□□ -0.82
CHD3-213ENST00000571249 C7orf43Q8WVR3 580 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 CSRNP1Q96S65 589 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 RAPGEFL1Q9UHV5 662 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 HDAC9Q9UKV0 1011 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 SCN11AQ9UI33 1791 aa9.91□□□□□ -0.82
CHD3-213ENST00000571249 HSP90AB2PQ58FF8 381 aa9.9□□□□□ -0.82
CHD3-213ENST00000571249 PHKG2P15735 406 aa9.89□□□□□ -0.83
CHD3-213ENST00000571249 LMOD1P29536 600 aaPredicted RBP9.89□□□□□ -0.83
CHD3-213ENST00000571249 FBXO46Q6PJ61 603 aaPredicted RBP9.89□□□□□ -0.83
CHD3-213ENST00000571249 USP50Q70EL3 339 aaPredicted RBP9.89□□□□□ -0.83
CHD3-213ENST00000571249 ERICH6Q7L0X2 663 aa9.89□□□□□ -0.83
CHD3-213ENST00000571249 TMC1Q8TDI8 760 aa9.89□□□□□ -0.83
CHD3-213ENST00000571249 BRIP1Q9BX63 1249 aa9.89□□□□□ -0.83
CHD3-213ENST00000571249 SLC12A5Q9H2X9 1139 aa9.89□□□□□ -0.83
CHD3-213ENST00000571249 PRDM6Q9NQX0 595 aa9.89□□□□□ -0.83
CHD3-213ENST00000571249 CACNA1SQ13698 1873 aa9.89□□□□□ -0.83
CHD3-213ENST00000571249 TBC1D8O95759 1140 aa9.88□□□□□ -0.83
CHD3-213ENST00000571249 PDE6BP35913 854 aa9.88□□□□□ -0.83
CHD3-213ENST00000571249 FKBP4Q02790 459 aaKnown RBP eCLIP9.88□□□□□ -0.83
CHD3-213ENST00000571249 RGMBQ6NW40 437 aa9.88□□□□□ -0.83
CHD3-213ENST00000571249 CNKSR1Q969H4 720 aa9.88□□□□□ -0.83
CHD3-213ENST00000571249 NARFQ9UHQ1 456 aa9.88□□□□□ -0.83
CHD3-213ENST00000571249 SPG7Q9UQ90 795 aa9.88□□□□□ -0.83
CHD3-213ENST00000571249 COL11A2P13942 1736 aaPredicted RBP9.87□□□□□ -0.83
CHD3-213ENST00000571249 ANKRD31Q8N7Z5 1873 aa9.87□□□□□ -0.83
CHD3-213ENST00000571249 SOX1O00570 391 aaPredicted RBP9.87□□□□□ -0.83
CHD3-213ENST00000571249 COL9A1P20849 921 aa9.87□□□□□ -0.83
CHD3-213ENST00000571249 IARSP41252 1262 aaKnown RBP9.87□□□□□ -0.83
CHD3-213ENST00000571249 PRR5LQ6MZQ0 368 aa9.87□□□□□ -0.83
CHD3-213ENST00000571249 TIMELESSQ9UNS1 1208 aa9.87□□□□□ -0.83
CHD3-213ENST00000571249 SOS1Q07889 1333 aaPredicted RBP9.86□□□□□ -0.83
CHD3-213ENST00000571249 TULP1O00294 542 aaPredicted RBP9.86□□□□□ -0.83
CHD3-213ENST00000571249 SRGNP10124 158 aa9.86□□□□□ -0.83
CHD3-213ENST00000571249 ZNF157P51786 506 aaPredicted RBP9.86□□□□□ -0.83
CHD3-213ENST00000571249 CCDC93Q567U6 631 aa9.86□□□□□ -0.83
CHD3-213ENST00000571249 SOGA3Q5TF21 947 aa9.86□□□□□ -0.83
CHD3-213ENST00000571249 HDGFL2Q7Z4V5 671 aaPredicted RBP9.86□□□□□ -0.83
CHD3-213ENST00000571249 IFNL2Q8IZJ0 200 aa9.86□□□□□ -0.83
CHD3-213ENST00000571249 LRCH3Q96II8 777 aa9.86□□□□□ -0.83
CHD3-213ENST00000571249 COG3Q96JB2 828 aa9.86□□□□□ -0.83
CHD3-213ENST00000571249 CACNA1AO00555 2505 aa9.85□□□□□ -0.83
CHD3-213ENST00000571249 STYK1Q6J9G0 422 aa9.85□□□□□ -0.83
CHD3-213ENST00000571249 COL4A5P29400 1685 aa9.85□□□□□ -0.83
CHD3-213ENST00000571249 AKAP11Q9UKA4 1901 aa9.84□□□□□ -0.83
CHD3-213ENST00000571249 ZNF831Q5JPB2 1677 aa9.84□□□□□ -0.83
CHD3-213ENST00000571249 EDC4Q6P2E9 1401 aaKnown RBP9.84□□□□□ -0.83
CHD3-213ENST00000571249 HIRAP54198 1017 aaPredicted RBP9.84□□□□□ -0.83
CHD3-213ENST00000571249 EIF6P56537 245 aaKnown RBP9.84□□□□□ -0.83
CHD3-213ENST00000571249 TBC1D9BQ66K14 1250 aa9.84□□□□□ -0.83
CHD3-213ENST00000571249 USP48Q86UV5 1035 aa9.84□□□□□ -0.83
CHD3-213ENST00000571249 CCDC102AQ96A19 550 aa9.84□□□□□ -0.83
CHD3-213ENST00000571249 PDZRN3Q9UPQ7 1066 aa9.84□□□□□ -0.83
CHD3-213ENST00000571249 MUC3AQ02505 3323 aa9.84□□□□□ -0.83
CHD3-213ENST00000571249 ERVV-2B6SEH9 535 aa9.83□□□□□ -0.84
CHD3-213ENST00000571249 DNAJC10Q8IXB1 793 aa9.83□□□□□ -0.84
CHD3-213ENST00000571249 JDP2Q8WYK2 163 aa9.83□□□□□ -0.84
CHD3-213ENST00000571249 MASTLQ96GX5 879 aa9.83□□□□□ -0.84
CHD3-213ENST00000571249 PGAP2Q9UHJ9 254 aa9.83□□□□□ -0.84
CHD3-213ENST00000571249 PAPPA2Q9BXP8 1791 aa9.83□□□□□ -0.84
CHD3-213ENST00000571249 R3HDMLQ9H3Y0 253 aa9.82□□□□□ -0.84
CHD3-213ENST00000571249 ADARB2Q9NS39 739 aaKnown RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms