RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 NPM2Q86SE8 214 aaKnown RBP11.29□□□□□ -0.6
VPS39-207ENST00000563692 TEX13AQ9BXU3 409 aaPredicted RBP11.29□□□□□ -0.6
VPS39-207ENST00000563692 ZNF831Q5JPB2 1677 aa11.29□□□□□ -0.6
VPS39-207ENST00000563692 PTPRCP08575 1304 aa11.29□□□□□ -0.6
VPS39-207ENST00000563692 SCN11AQ9UI33 1791 aa11.28□□□□□ -0.6
VPS39-207ENST00000563692 TCERG1O14776 1098 aaKnown RBP11.28□□□□□ -0.6
VPS39-207ENST00000563692 HOXB7P09629 217 aa11.28□□□□□ -0.6
VPS39-207ENST00000563692 CYP19A1P11511 503 aaPredicted RBP11.28□□□□□ -0.6
VPS39-207ENST00000563692 GYS1P13807 737 aa11.28□□□□□ -0.6
VPS39-207ENST00000563692 INTS5Q6P9B9 1019 aaKnown RBP11.28□□□□□ -0.6
VPS39-207ENST00000563692 ZNF790Q6PG37 636 aa11.28□□□□□ -0.6
VPS39-207ENST00000563692 TMEM57Q8N5G2 664 aa11.28□□□□□ -0.6
VPS39-207ENST00000563692 FMNL2Q96PY5 1086 aa11.28□□□□□ -0.6
VPS39-207ENST00000563692 YBX3P16989 372 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS39-207ENST00000563692 KRT24Q2M2I5 525 aa11.27□□□□□ -0.61
VPS39-207ENST00000563692 TNNQ9UQP3 1299 aa11.27□□□□□ -0.61
VPS39-207ENST00000563692 USP42Q9H9J4 1324 aaKnown RBP11.27□□□□□ -0.61
VPS39-207ENST00000563692 A0A087WZG4 1122 aa11.26□□□□□ -0.61
VPS39-207ENST00000563692 EIF4A1P60842 406 aaKnown RBP11.26□□□□□ -0.61
VPS39-207ENST00000563692 TGFB2P61812 414 aa11.26□□□□□ -0.61
VPS39-207ENST00000563692 ZNF784Q8NCA9 323 aaPredicted RBP11.26□□□□□ -0.61
VPS39-207ENST00000563692 ZNF496Q96IT1 587 aaPredicted RBP11.26□□□□□ -0.61
VPS39-207ENST00000563692 SRP68Q9UHB9 627 aaKnown RBP11.26□□□□□ -0.61
VPS39-207ENST00000563692 ZBTB1Q9Y2K1 713 aa11.26□□□□□ -0.61
VPS39-207ENST00000563692 KDM2BQ8NHM5 1336 aa11.26□□□□□ -0.61
VPS39-207ENST00000563692 WWC3Q9ULE0 1092 aa11.25□□□□□ -0.61
VPS39-207ENST00000563692 ZNF330Q9Y3S2 320 aaPredicted RBP11.25□□□□□ -0.61
VPS39-207ENST00000563692 COL5A3P25940 1745 aaPredicted RBP11.25□□□□□ -0.61
VPS39-207ENST00000563692 COL15A1P39059 1388 aa11.25□□□□□ -0.61
VPS39-207ENST00000563692 HEG1Q9ULI3 1381 aa11.25□□□□□ -0.61
VPS39-207ENST00000563692 KCPQ6ZWJ8 1503 aa11.25□□□□□ -0.61
VPS39-207ENST00000563692 ZBTB7BO15156 539 aaPredicted RBP11.24□□□□□ -0.61
VPS39-207ENST00000563692 HDGFL1Q5TGJ6 251 aa11.24□□□□□ -0.61
VPS39-207ENST00000563692 USPL1Q5W0Q7 1092 aa11.24□□□□□ -0.61
VPS39-207ENST00000563692 INTS3Q68E01 1043 aaKnown RBP11.24□□□□□ -0.61
VPS39-207ENST00000563692 TSHZ2Q9NRE2 1034 aa11.24□□□□□ -0.61
VPS39-207ENST00000563692 ZBTB40Q9NUA8 1239 aa11.24□□□□□ -0.61
VPS39-207ENST00000563692 NARFQ9UHQ1 456 aa11.24□□□□□ -0.61
VPS39-207ENST00000563692 ABCC4O15439 1325 aa11.24□□□□□ -0.61
VPS39-207ENST00000563692 CICQ96RK0 1608 aaPredicted RBP11.24□□□□□ -0.61
VPS39-207ENST00000563692 ADAMTS7Q9UKP4 1686 aa11.24□□□□□ -0.61
VPS39-207ENST00000563692 UTRNP46939 3433 aa11.23□□□□□ -0.61
VPS39-207ENST00000563692 IGHDP01880 384 aa11.23□□□□□ -0.61
VPS39-207ENST00000563692 CCT4P50991 539 aaKnown RBP11.23□□□□□ -0.61
VPS39-207ENST00000563692 PCDHB15Q9Y5E8 787 aa11.23□□□□□ -0.61
VPS39-207ENST00000563692 C10orf71Q711Q0 1435 aa11.23□□□□□ -0.61
VPS39-207ENST00000563692 TJP1Q07157 1748 aa11.23□□□□□ -0.61
VPS39-207ENST00000563692 SNRPA1P09661 255 aaKnown RBP11.22□□□□□ -0.61
VPS39-207ENST00000563692 HDAC1Q13547 482 aaPredicted RBP11.22□□□□□ -0.61
VPS39-207ENST00000563692 MYH14Q7Z406 1995 aaKnown RBP11.22□□□□□ -0.61
VPS39-207ENST00000563692 BCS1LQ9Y276 419 aa11.22□□□□□ -0.61
VPS39-207ENST00000563692 A0A0G2JLW4 131 aa11.21□□□□□ -0.61
VPS39-207ENST00000563692 DPEP1P16444 411 aa11.21□□□□□ -0.61
VPS39-207ENST00000563692 EIF2S2P20042 333 aaKnown RBP11.21□□□□□ -0.61
VPS39-207ENST00000563692 IL6STP40189 918 aaPredicted RBP11.21□□□□□ -0.61
VPS39-207ENST00000563692 EIF5P55010 431 aaKnown RBP11.21□□□□□ -0.61
VPS39-207ENST00000563692 DDR1Q08345 913 aa11.21□□□□□ -0.61
VPS39-207ENST00000563692 FLIIQ13045 1269 aa11.21□□□□□ -0.61
VPS39-207ENST00000563692 FKBP5Q13451 457 aaPredicted RBP11.21□□□□□ -0.61
VPS39-207ENST00000563692 DBF4Q9UBU7 674 aaPredicted RBP11.21□□□□□ -0.61
VPS39-207ENST00000563692 PXDNLA1KZ92 1463 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 CHD4Q14839 1912 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 POLRMTO00411 1230 aaKnown RBP11.2□□□□□ -0.62
VPS39-207ENST00000563692 NPHP1O15259 732 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 KCNQ3O43525 872 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 GIGYF1O75420 1035 aaPredicted RBP11.2□□□□□ -0.62
VPS39-207ENST00000563692 A1BGP04217 495 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 TM4SF1P30408 202 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 NFIXQ14938 502 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 NECTIN2Q92692 538 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 PIM2Q9P1W9 311 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 C4AP0C0L4 1744 aa11.2□□□□□ -0.62
VPS39-207ENST00000563692 DALRD3Q5D0E6 543 aaKnown RBP11.19□□□□□ -0.62
VPS39-207ENST00000563692 SLC4A10Q6U841 1118 aa11.19□□□□□ -0.62
VPS39-207ENST00000563692 BICDL1Q6ZP65 573 aa11.19□□□□□ -0.62
VPS39-207ENST00000563692 G2E3Q7L622 706 aa11.19□□□□□ -0.62
VPS39-207ENST00000563692 HYPKQ9NX55 129 aa11.19□□□□□ -0.62
VPS39-207ENST00000563692 TBC1D2BQ9UPU7 963 aa11.19□□□□□ -0.62
VPS39-207ENST00000563692 GOLGB1Q14789 3259 aaKnown RBP11.18□□□□□ -0.62
VPS39-207ENST00000563692 SERPINB2P05120 415 aa11.18□□□□□ -0.62
VPS39-207ENST00000563692 ARHGAP27Q6ZUM4 889 aa11.18□□□□□ -0.62
VPS39-207ENST00000563692 DZIP3Q86Y13 1208 aaKnown RBP11.18□□□□□ -0.62
VPS39-207ENST00000563692 RPAP2Q8IXW5 612 aaPredicted RBP11.18□□□□□ -0.62
VPS39-207ENST00000563692 ZNF652Q9Y2D9 606 aa11.18□□□□□ -0.62
VPS39-207ENST00000563692 USP16Q9Y5T5 823 aa11.18□□□□□ -0.62
VPS39-207ENST00000563692 UBR2Q8IWV8 1755 aa11.18□□□□□ -0.62
VPS39-207ENST00000563692 VIRMAQ69YN4 1812 aaKnown RBP11.17□□□□□ -0.62
VPS39-207ENST00000563692 DDX58O95786 925 aaKnown RBP11.17□□□□□ -0.62
VPS39-207ENST00000563692 GNAI3P08754 354 aa11.17□□□□□ -0.62
VPS39-207ENST00000563692 GCC1Q96CN9 775 aa11.17□□□□□ -0.62
VPS39-207ENST00000563692 SETDB2Q96T68 719 aa11.17□□□□□ -0.62
VPS39-207ENST00000563692 BCL2L12Q9HB09 334 aa11.17□□□□□ -0.62
VPS39-207ENST00000563692 CHRNA5P30532 468 aa11.16□□□□□ -0.62
VPS39-207ENST00000563692 TBC1D9BQ66K14 1250 aa11.16□□□□□ -0.62
VPS39-207ENST00000563692 GPBP1L1Q9HC44 474 aaPredicted RBP11.16□□□□□ -0.62
VPS39-207ENST00000563692 CHPF2Q9P2E5 772 aa11.16□□□□□ -0.62
VPS39-207ENST00000563692 PDZRN3Q9UPQ7 1066 aa11.16□□□□□ -0.62
VPS39-207ENST00000563692 HDAC5Q9UQL6 1122 aa11.16□□□□□ -0.62
VPS39-207ENST00000563692 RBM19Q9Y4C8 960 aaKnown RBP11.16□□□□□ -0.62
VPS39-207ENST00000563692 CARMIL3Q8ND23 1372 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms