RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ANO10Q9NW15 660 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 CCDC69A6NI79 296 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 TSR1Q2NL82 804 aaKnown RBP16.66■□□□□ 0.26
LIMS1-215ENST00000544547 SYT10Q6XYQ8 523 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 CCDC191Q8NCU4 936 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 CCDC171Q6TFL3 1326 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 HSP90AB2PQ58FF8 381 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 INTS4Q96HW7 963 aaKnown RBP16.66■□□□□ 0.26
LIMS1-215ENST00000544547 PDLIM2Q96JY6 352 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 PRDM4Q9UKN5 801 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 UGGT1Q9NYU2 1555 aa16.66■□□□□ 0.26
LIMS1-215ENST00000544547 NEMFO60524 1076 aa16.65■□□□□ 0.26
LIMS1-215ENST00000544547 CEP85Q6P2H3 762 aa16.65■□□□□ 0.26
LIMS1-215ENST00000544547 PAXIP1Q6ZW49 1069 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-215ENST00000544547 NLRP2Q9NX02 1062 aa16.65■□□□□ 0.26
LIMS1-215ENST00000544547 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.65■□□□□ 0.26
LIMS1-215ENST00000544547 IBTKQ9P2D0 1353 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-215ENST00000544547 ANKRD1Q15327 319 aa16.65■□□□□ 0.26
LIMS1-215ENST00000544547 SH2B1Q9NRF2 756 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-215ENST00000544547 ABCA8O94911 1581 aa16.65■□□□□ 0.26
LIMS1-215ENST00000544547 ABTB2Q8N961 1025 aa16.64■□□□□ 0.26
LIMS1-215ENST00000544547 ZSCAN20P17040 1043 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-215ENST00000544547 MCM6Q14566 821 aa16.64■□□□□ 0.25
LIMS1-215ENST00000544547 AACSQ86V21 672 aa16.64■□□□□ 0.25
LIMS1-215ENST00000544547 ZNF215Q9UL58 517 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-215ENST00000544547 EIF3JO75822 258 aaKnown RBP16.64■□□□□ 0.25
LIMS1-215ENST00000544547 NAA30Q147X3 362 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-215ENST00000544547 NEUROD6Q96NK8 337 aa16.63■□□□□ 0.25
LIMS1-215ENST00000544547 USP16Q9Y5T5 823 aa16.63■□□□□ 0.25
LIMS1-215ENST00000544547 ANAPC15P60006 121 aa16.63■□□□□ 0.25
LIMS1-215ENST00000544547 TRDNQ13061 729 aa16.63■□□□□ 0.25
LIMS1-215ENST00000544547 KRBA2Q6ZNG9 492 aa16.63■□□□□ 0.25
LIMS1-215ENST00000544547 PALD1Q9ULE6 856 aa16.63■□□□□ 0.25
LIMS1-215ENST00000544547 ERLIN1O75477 346 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 TXLNBQ8N3L3 684 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 RUFY1Q96T51 708 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 CCDC70Q6NSX1 233 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 FSIP1Q8NA03 581 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 CHMLP26374 656 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 NRBP1Q9UHY1 535 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 HSP90AB3PQ58FF7 597 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 HSP90AA4PQ58FG1 418 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 RIC3Q7Z5B4 369 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 ZMYM3Q14202 1370 aa16.62■□□□□ 0.25
LIMS1-215ENST00000544547 FOXO3O43524 673 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 GNG11P61952 73 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 TRIM29Q14134 588 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 USHBP1Q8N6Y0 703 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 RDXP35241 583 aaKnown RBP16.61■□□□□ 0.25
LIMS1-215ENST00000544547 STX1AQ16623 288 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 CCAR1Q8IX12 1150 aaKnown RBP16.61■□□□□ 0.25
LIMS1-215ENST00000544547 AOPEPQ8N6M6 819 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 CAGE1Q8TC20 777 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 CBX8Q9HC52 389 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 RSPH14Q9UHP6 348 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 ABCC2Q92887 1545 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 IPO7O95373 1038 aaKnown RBP16.61■□□□□ 0.25
LIMS1-215ENST00000544547 KIAA1524Q8TCG1 905 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 ERCC4Q92889 916 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-215ENST00000544547 RASSF4Q9H2L5 321 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 TRPM1Q7Z4N2 1603 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 CDC42BPAQ5VT25 1732 aa16.61■□□□□ 0.25
LIMS1-215ENST00000544547 GSDMDP57764 484 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 CASQ1P31415 396 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 BOLA2Q9H3K6 86 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 PHACTR2O75167 634 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 KIF1BPQ96EK5 621 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 ERO1AQ96HE7 468 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 PCMTD1Q96MG8 357 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-215ENST00000544547 FLIIQ13045 1269 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 JAKMIP3Q5VZ66 844 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 VPS37DQ86XT2 251 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 PLEKHF1Q96S99 279 aa16.6■□□□□ 0.25
LIMS1-215ENST00000544547 NEK11Q8NG66 645 aa16.59■□□□□ 0.25
LIMS1-215ENST00000544547 ARFGAP3Q9NP61 516 aa16.59■□□□□ 0.25
LIMS1-215ENST00000544547 RAD21O60216 631 aa16.59■□□□□ 0.25
LIMS1-215ENST00000544547 GLRX3O76003 335 aaKnown RBP16.59■□□□□ 0.25
LIMS1-215ENST00000544547 CEP89Q96ST8 783 aa16.59■□□□□ 0.25
LIMS1-215ENST00000544547 ERCC6LQ2NKX8 1250 aa16.59■□□□□ 0.25
LIMS1-215ENST00000544547 KIF2CQ99661 725 aa16.59■□□□□ 0.25
LIMS1-215ENST00000544547 ASXL2Q76L83 1435 aa16.59■□□□□ 0.25
LIMS1-215ENST00000544547 TOP1P11387 765 aaKnown RBP16.59■□□□□ 0.25
LIMS1-215ENST00000544547 CCT2P78371 535 aaKnown RBP16.59■□□□□ 0.25
LIMS1-215ENST00000544547 TTC37Q6PGP7 1564 aa16.58■□□□□ 0.25
LIMS1-215ENST00000544547 ATF3P18847 181 aa16.58■□□□□ 0.25
LIMS1-215ENST00000544547 ZNF75DP51815 510 aa16.58■□□□□ 0.25
LIMS1-215ENST00000544547 CENPHQ9H3R5 247 aa16.58■□□□□ 0.25
LIMS1-215ENST00000544547 HOOK1Q9UJC3 728 aaKnown RBP16.58■□□□□ 0.25
LIMS1-215ENST00000544547 ANXA1P04083 346 aa16.58■□□□□ 0.24
LIMS1-215ENST00000544547 CAPN2P17655 700 aa16.58■□□□□ 0.24
LIMS1-215ENST00000544547 ZSCAN25Q6NSZ9 544 aa16.58■□□□□ 0.24
LIMS1-215ENST00000544547 KIF4BQ2VIQ3 1234 aa16.58■□□□□ 0.24
LIMS1-215ENST00000544547 EIF4A2Q14240 407 aaKnown RBP16.57■□□□□ 0.24
LIMS1-215ENST00000544547 G2E3Q7L622 706 aa16.57■□□□□ 0.24
LIMS1-215ENST00000544547 CPLX3Q8WVH0 158 aa16.57■□□□□ 0.24
LIMS1-215ENST00000544547 RNF216Q9NWF9 866 aaPredicted RBP16.57■□□□□ 0.24
LIMS1-215ENST00000544547 ZSCAN12O43309 604 aa16.57■□□□□ 0.24
LIMS1-215ENST00000544547 LRRC2Q9BYS8 371 aa16.57■□□□□ 0.24
LIMS1-215ENST00000544547 CCDC8Q9H0W5 538 aaPredicted RBP16.57■□□□□ 0.24
LIMS1-215ENST00000544547 WASHC4Q2M389 1173 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms