RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 WDR43Q15061 677 aaKnown RBP eCLIP13.73□□□□□ -0.21
PRPF40B-204ENST00000527253 PDIA6Q15084 440 aa13.73□□□□□ -0.21
PRPF40B-204ENST00000527253 CNBD1Q8NA66 436 aa13.73□□□□□ -0.21
PRPF40B-204ENST00000527253 CHL1O00533 1208 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 RGL2O15211 777 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 MYL6BP14649 208 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 PDE6BP35913 854 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 CCDC184Q52MB2 194 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 LRP10Q7Z4F1 713 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 NBPF5PQ86XG9 351 aaPredicted RBP13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 ZNF622Q969S3 477 aaKnown RBP eCLIP13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 BABAM1Q9NWV8 329 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 NIP7Q9Y221 180 aaKnown RBP eCLIP13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 COL11A2P13942 1736 aaPredicted RBP13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 SBF1O95248 1867 aa13.72□□□□□ -0.21
PRPF40B-204ENST00000527253 FAM177BA6PVY3 158 aa13.71□□□□□ -0.21
PRPF40B-204ENST00000527253 SRGNP10124 158 aa13.71□□□□□ -0.21
PRPF40B-204ENST00000527253 LMOD3Q0VAK6 560 aa13.71□□□□□ -0.21
PRPF40B-204ENST00000527253 KRT24Q2M2I5 525 aa13.71□□□□□ -0.21
PRPF40B-204ENST00000527253 RNF181Q9P0P0 153 aa13.71□□□□□ -0.21
PRPF40B-204ENST00000527253 ZNF652Q9Y2D9 606 aa13.71□□□□□ -0.21
PRPF40B-204ENST00000527253 MAP3K15Q6ZN16 1313 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 ERVV-1B6SEH8 477 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 NFKBIEO00221 500 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 ANXA1P04083 346 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 EIF2S2P20042 333 aaKnown RBP13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 ZEB1P37275 1124 aaPredicted RBP13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 ST5P78524 1137 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 PROSER3Q2NL68 480 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 NMRK2Q9NPI5 230 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 ZNF219Q9P2Y4 722 aaPredicted RBP13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 PDZRN3Q9UPQ7 1066 aa13.7□□□□□ -0.22
PRPF40B-204ENST00000527253 SENP3-EIF4A1A0A087X0R7 540 aa13.69□□□□□ -0.22
PRPF40B-204ENST00000527253 KLRG2A4D1S0 409 aaPredicted RBP13.69□□□□□ -0.22
PRPF40B-204ENST00000527253 C21orf2O43822 256 aa13.69□□□□□ -0.22
PRPF40B-204ENST00000527253 STYK1Q6J9G0 422 aa13.69□□□□□ -0.22
PRPF40B-204ENST00000527253 ZBTB3Q9H5J0 574 aa13.69□□□□□ -0.22
PRPF40B-204ENST00000527253 ERBB4Q15303 1308 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 APAF1O14727 1248 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 NPHP1O15259 732 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 TPTE2Q6XPS3 522 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 NECTIN2Q92692 538 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 MASTLQ96GX5 879 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 LAS1LQ9Y4W2 734 aaKnown RBP13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 NUP98P52948 1817 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 SLX4Q8IY92 1834 aa13.68□□□□□ -0.22
PRPF40B-204ENST00000527253 UBN2Q6ZU65 1347 aa13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 GPTP24298 496 aa13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 SUSD4Q5VX71 490 aa13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 PRPF40BQ6NWY9 871 aaKnown RBP13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 KIF6Q6ZMV9 814 aa13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 ZNF34Q8IZ26 560 aa13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 C7orf43Q8WVR3 580 aa13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 CNKSR1Q969H4 720 aa13.67□□□□□ -0.22
PRPF40B-204ENST00000527253 LMNB1P20700 586 aa13.66□□□□□ -0.22
PRPF40B-204ENST00000527253 ERFEQ4G0M1 354 aa13.66□□□□□ -0.22
PRPF40B-204ENST00000527253 GIGYF2Q6Y7W6 1299 aaKnown RBP13.66□□□□□ -0.22
PRPF40B-204ENST00000527253 NUTM1Q86Y26 1132 aa13.66□□□□□ -0.22
PRPF40B-204ENST00000527253 ABCC12Q96J65 1359 aa13.66□□□□□ -0.22
PRPF40B-204ENST00000527253 ZNF316A6NFI3 1004 aaPredicted RBP13.65□□□□□ -0.22
PRPF40B-204ENST00000527253 ZNF853P0CG23 659 aa13.65□□□□□ -0.22
PRPF40B-204ENST00000527253 NPR1P16066 1061 aa13.65□□□□□ -0.22
PRPF40B-204ENST00000527253 FER1L6Q2WGJ9 1857 aa13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 CCDC88AQ3V6T2 1871 aa13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 TNRC6CQ9HCJ0 1690 aaKnown RBP13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 OLFM4Q6UX06 510 aa13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 COPS6Q7L5N1 327 aa13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 XAGE3Q8WTP9 111 aa13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 CFAP44Q96MT7 982 aa13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 MBIPQ9NS73 344 aa13.64□□□□□ -0.23
PRPF40B-204ENST00000527253 NTSR2O95665 410 aa13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 GTF2E1P29083 439 aaPredicted RBP13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 AIMP1Q12904 312 aaKnown RBP13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 CRY2Q49AN0 593 aa13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 C3orf67Q6ZVT6 689 aa13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 RRAGCQ9HB90 399 aa13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 DDX21Q9NR30 783 aaKnown RBP eCLIP13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 CACNA1SQ13698 1873 aa13.63□□□□□ -0.23
PRPF40B-204ENST00000527253 TOMM70O94826 608 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 DUSP27Q5VZP5 1158 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 SLC51AQ86UW1 340 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 NYXQ9GZU5 481 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 CHPF2Q9P2E5 772 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 ARFGEF2Q9Y6D5 1785 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 KDM2BQ8NHM5 1336 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 LTBP3Q9NS15 1303 aa13.62□□□□□ -0.23
PRPF40B-204ENST00000527253 IBTKQ9P2D0 1353 aaPredicted RBP13.61□□□□□ -0.23
PRPF40B-204ENST00000527253 HSPA6P17066 643 aa13.61□□□□□ -0.23
PRPF40B-204ENST00000527253 TAOK3Q9H2K8 898 aa13.61□□□□□ -0.23
PRPF40B-204ENST00000527253 ZC3H4Q9UPT8 1303 aaKnown RBP13.61□□□□□ -0.23
PRPF40B-204ENST00000527253 GLTPD2A6NH11 291 aa13.6□□□□□ -0.23
PRPF40B-204ENST00000527253 POTECB2RU33 542 aa13.6□□□□□ -0.23
PRPF40B-204ENST00000527253 HOXB7P09629 217 aa13.6□□□□□ -0.23
PRPF40B-204ENST00000527253 HDGFL1Q5TGJ6 251 aa13.6□□□□□ -0.23
PRPF40B-204ENST00000527253 SYNE4Q8N205 404 aa13.6□□□□□ -0.23
PRPF40B-204ENST00000527253 IFT57Q9NWB7 429 aa13.6□□□□□ -0.23
PRPF40B-204ENST00000527253 RIC1Q4ADV7 1423 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 HOXA10P31260 410 aaPredicted RBP13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 TCIRG1Q13488 830 aa13.59□□□□□ -0.23
PRPF40B-204ENST00000527253 PARP10Q53GL7 1025 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms