RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ZBED9Q6R2W3 1325 aa13□□□□□ -0.33
NUP54-203ENST00000504173 POTECB2RU33 542 aa13□□□□□ -0.33
NUP54-203ENST00000504173 EIF4A1P60842 406 aaKnown RBP13□□□□□ -0.33
NUP54-203ENST00000504173 DALRD3Q5D0E6 543 aaKnown RBP13□□□□□ -0.33
NUP54-203ENST00000504173 TSR2Q969E8 191 aaKnown RBP13□□□□□ -0.33
NUP54-203ENST00000504173 SLC4A9Q96Q91 983 aa13□□□□□ -0.33
NUP54-203ENST00000504173 MYH16Q9H6N6 1097 aa13□□□□□ -0.33
NUP54-203ENST00000504173 E9PSI1 815 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 SNRPA1P09661 255 aaKnown RBP12.99□□□□□ -0.33
NUP54-203ENST00000504173 ITPK1Q13572 414 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 CHADLQ6NUI6 762 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 VSIG10Q8N0Z9 540 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 NLGN1Q8N2Q7 840 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 YTHDC1Q96MU7 727 aaKnown RBP12.99□□□□□ -0.33
NUP54-203ENST00000504173 C4AP0C0L4 1744 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 TJP1Q07157 1748 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 ZNF831Q5JPB2 1677 aa12.99□□□□□ -0.33
NUP54-203ENST00000504173 FANCIQ9NVI1 1328 aa12.98□□□□□ -0.33
NUP54-203ENST00000504173 DNAJC10Q8IXB1 793 aa12.98□□□□□ -0.33
NUP54-203ENST00000504173 TEX13AQ9BXU3 409 aaPredicted RBP12.98□□□□□ -0.33
NUP54-203ENST00000504173 SPINK5Q9NQ38 1064 aaPredicted RBP12.98□□□□□ -0.33
NUP54-203ENST00000504173 PASKQ96RG2 1323 aa12.97□□□□□ -0.33
NUP54-203ENST00000504173 KRT24Q2M2I5 525 aa12.97□□□□□ -0.33
NUP54-203ENST00000504173 LINC00116Q8NCU8 138 aa12.97□□□□□ -0.33
NUP54-203ENST00000504173 CDCA7LQ96GN5 454 aa12.97□□□□□ -0.33
NUP54-203ENST00000504173 PRAMEF22A3QJZ6 481 aa12.96□□□□□ -0.33
NUP54-203ENST00000504173 STARD3NLO95772 234 aa12.96□□□□□ -0.33
NUP54-203ENST00000504173 LMNB1P20700 586 aa12.96□□□□□ -0.33
NUP54-203ENST00000504173 MAP2K1Q02750 393 aaPredicted RBP12.96□□□□□ -0.33
NUP54-203ENST00000504173 SLFN5Q08AF3 891 aa12.96□□□□□ -0.33
NUP54-203ENST00000504173 PRPF38BQ5VTL8 546 aaKnown RBP12.96□□□□□ -0.33
NUP54-203ENST00000504173 COL5A3P25940 1745 aaPredicted RBP12.96□□□□□ -0.34
NUP54-203ENST00000504173 CYP19A1P11511 503 aaPredicted RBP12.95□□□□□ -0.34
NUP54-203ENST00000504173 DUSP27Q5VZP5 1158 aa12.95□□□□□ -0.34
NUP54-203ENST00000504173 LAMB4A4D0S4 1761 aa12.94□□□□□ -0.34
NUP54-203ENST00000504173 CNTNAP4Q9C0A0 1308 aa12.94□□□□□ -0.34
NUP54-203ENST00000504173 ELL2O00472 640 aaPredicted RBP12.94□□□□□ -0.34
NUP54-203ENST00000504173 GNPATO15228 680 aa12.94□□□□□ -0.34
NUP54-203ENST00000504173 HOXB7P09629 217 aa12.94□□□□□ -0.34
NUP54-203ENST00000504173 CRKLP46109 303 aaKnown RBP12.94□□□□□ -0.34
NUP54-203ENST00000504173 EXOSC9Q06265 439 aaKnown RBP12.94□□□□□ -0.34
NUP54-203ENST00000504173 C8orf58Q8NAV2 365 aa12.94□□□□□ -0.34
NUP54-203ENST00000504173 USP16Q9Y5T5 823 aa12.94□□□□□ -0.34
NUP54-203ENST00000504173 RASSF10A6NK89 507 aa12.93□□□□□ -0.34
NUP54-203ENST00000504173 TMEM88BA6NKF7 163 aa12.93□□□□□ -0.34
NUP54-203ENST00000504173 EIF2S2P20042 333 aaKnown RBP12.93□□□□□ -0.34
NUP54-203ENST00000504173 RASSF7Q02833 373 aa12.93□□□□□ -0.34
NUP54-203ENST00000504173 PARP3Q9Y6F1 533 aa12.93□□□□□ -0.34
NUP54-203ENST00000504173 SOS1Q07889 1333 aaPredicted RBP12.92□□□□□ -0.34
NUP54-203ENST00000504173 TWISTNBQ3B726 338 aaPredicted RBP12.92□□□□□ -0.34
NUP54-203ENST00000504173 RC3H1Q5TC82 1133 aaKnown RBP12.92□□□□□ -0.34
NUP54-203ENST00000504173 HDGFL1Q5TGJ6 251 aa12.92□□□□□ -0.34
NUP54-203ENST00000504173 TIAM2Q8IVF5 1701 aa12.92□□□□□ -0.34
NUP54-203ENST00000504173 TSPYL6Q8N831 410 aa12.92□□□□□ -0.34
NUP54-203ENST00000504173 NECTIN2Q92692 538 aa12.92□□□□□ -0.34
NUP54-203ENST00000504173 A1BGP04217 495 aa12.91□□□□□ -0.34
NUP54-203ENST00000504173 GYS1P13807 737 aa12.91□□□□□ -0.34
NUP54-203ENST00000504173 CANXP27824 592 aaKnown RBP12.91□□□□□ -0.34
NUP54-203ENST00000504173 INTS5Q6P9B9 1019 aaKnown RBP12.91□□□□□ -0.34
NUP54-203ENST00000504173 TRMT2AQ8IZ69 625 aaKnown RBP12.91□□□□□ -0.34
NUP54-203ENST00000504173 ZBTB1Q9Y2K1 713 aa12.91□□□□□ -0.34
NUP54-203ENST00000504173 RTCBQ9Y3I0 505 aaKnown RBP12.91□□□□□ -0.34
NUP54-203ENST00000504173 THSD7BQ9C0I4 1608 aa12.91□□□□□ -0.34
NUP54-203ENST00000504173 MYH14Q7Z406 1995 aaKnown RBP12.9□□□□□ -0.34
NUP54-203ENST00000504173 PIP4K2AP48426 406 aaPredicted RBP12.9□□□□□ -0.34
NUP54-203ENST00000504173 TRAPPC3LQ5T215 181 aa12.9□□□□□ -0.34
NUP54-203ENST00000504173 DPY19L2Q6NUT2 758 aa12.9□□□□□ -0.34
NUP54-203ENST00000504173 CHMP4AQ9BY43 222 aa12.9□□□□□ -0.34
NUP54-203ENST00000504173 ERBB4Q15303 1308 aa12.89□□□□□ -0.35
NUP54-203ENST00000504173 RPS6KA4O75676 772 aa12.89□□□□□ -0.35
NUP54-203ENST00000504173 POTEIP0CG38 1075 aa12.89□□□□□ -0.35
NUP54-203ENST00000504173 POTEJP0CG39 1038 aa12.89□□□□□ -0.35
NUP54-203ENST00000504173 NPM2Q86SE8 214 aaKnown RBP12.89□□□□□ -0.35
NUP54-203ENST00000504173 MCOLN1Q9GZU1 580 aa12.89□□□□□ -0.35
NUP54-203ENST00000504173 ZNF330Q9Y3S2 320 aaPredicted RBP12.89□□□□□ -0.35
NUP54-203ENST00000504173 WDR33Q9C0J8 1336 aaKnown RBP12.88□□□□□ -0.35
NUP54-203ENST00000504173 NBPF26B4DH59 902 aa12.88□□□□□ -0.35
NUP54-203ENST00000504173 VAMP4O75379 141 aa12.88□□□□□ -0.35
NUP54-203ENST00000504173 MYL6BP14649 208 aa12.88□□□□□ -0.35
NUP54-203ENST00000504173 IL6STP40189 918 aaPredicted RBP12.88□□□□□ -0.35
NUP54-203ENST00000504173 CCDC30Q5VVM6 783 aa12.88□□□□□ -0.35
NUP54-203ENST00000504173 NBPF10Q6P3W6 841 aaKnown RBP12.88□□□□□ -0.35
NUP54-203ENST00000504173 NBPF15Q8N660 670 aa12.88□□□□□ -0.35
NUP54-203ENST00000504173 CHPF2Q9P2E5 772 aa12.88□□□□□ -0.35
NUP54-203ENST00000504173 COL15A1P39059 1388 aa12.87□□□□□ -0.35
NUP54-203ENST00000504173 ITGBL1O95965 494 aaPredicted RBP12.87□□□□□ -0.35
NUP54-203ENST00000504173 ANXA1P04083 346 aa12.87□□□□□ -0.35
NUP54-203ENST00000504173 CT47B1P0C2W7 299 aaPredicted RBP12.87□□□□□ -0.35
NUP54-203ENST00000504173 CHRNA5P30532 468 aa12.87□□□□□ -0.35
NUP54-203ENST00000504173 DEFB115Q30KQ5 88 aa12.87□□□□□ -0.35
NUP54-203ENST00000504173 LDHDQ86WU2 507 aa12.87□□□□□ -0.35
NUP54-203ENST00000504173 STK31Q9BXU1 1019 aa12.87□□□□□ -0.35
NUP54-203ENST00000504173 DDX21Q9NR30 783 aaKnown RBP eCLIP12.87□□□□□ -0.35
NUP54-203ENST00000504173 DBF4Q9UBU7 674 aaPredicted RBP12.87□□□□□ -0.35
NUP54-203ENST00000504173 A0A087WZG4 1122 aa12.86□□□□□ -0.35
NUP54-203ENST00000504173 TCERG1O14776 1098 aaKnown RBP12.86□□□□□ -0.35
NUP54-203ENST00000504173 EIF5P55010 431 aaKnown RBP12.86□□□□□ -0.35
NUP54-203ENST00000504173 PROSER3Q2NL68 480 aa12.86□□□□□ -0.35
NUP54-203ENST00000504173 ARHGEF1Q92888 912 aaKnown RBP12.86□□□□□ -0.35
NUP54-203ENST00000504173 RFC4P35249 363 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms