RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RPS6KA4O75676 772 aa10.42□□□□□ -0.74
USP40-216ENST00000485943 ITPK1Q13572 414 aa10.42□□□□□ -0.74
USP40-216ENST00000485943 COL23A1Q86Y22 540 aaPredicted RBP10.42□□□□□ -0.74
USP40-216ENST00000485943 ZNF496Q96IT1 587 aaPredicted RBP10.42□□□□□ -0.74
USP40-216ENST00000485943 PARP3Q9Y6F1 533 aa10.42□□□□□ -0.74
USP40-216ENST00000485943 QSER1Q2KHR3 1735 aa10.41□□□□□ -0.74
USP40-216ENST00000485943 CEMIPQ8WUJ3 1361 aa10.41□□□□□ -0.74
USP40-216ENST00000485943 HAX1O00165 279 aa10.41□□□□□ -0.74
USP40-216ENST00000485943 EIF2S2P20042 333 aaKnown RBP10.41□□□□□ -0.74
USP40-216ENST00000485943 GNAI1P63096 354 aa10.41□□□□□ -0.74
USP40-216ENST00000485943 NLGN1Q8N2Q7 840 aa10.41□□□□□ -0.74
USP40-216ENST00000485943 ZNF652Q9Y2D9 606 aa10.41□□□□□ -0.74
USP40-216ENST00000485943 PAPPAQ13219 1627 aa10.4□□□□□ -0.74
USP40-216ENST00000485943 SENP3-EIF4A1A0A087X0R7 540 aa10.4□□□□□ -0.74
USP40-216ENST00000485943 GOLGA2Q08379 1002 aa10.4□□□□□ -0.74
USP40-216ENST00000485943 KIF6Q6ZMV9 814 aa10.4□□□□□ -0.74
USP40-216ENST00000485943 NGEFQ8N5V2 710 aa10.4□□□□□ -0.74
USP40-216ENST00000485943 BMP2KQ9NSY1 1161 aaPredicted RBP10.4□□□□□ -0.74
USP40-216ENST00000485943 LRP5O75197 1615 aa10.4□□□□□ -0.75
USP40-216ENST00000485943 TUBGCP6Q96RT7 1819 aa10.4□□□□□ -0.75
USP40-216ENST00000485943 UBR3Q6ZT12 1888 aa10.39□□□□□ -0.75
USP40-216ENST00000485943 ZNF831Q5JPB2 1677 aa10.39□□□□□ -0.75
USP40-216ENST00000485943 GALR2O43603 387 aaPredicted RBP10.39□□□□□ -0.75
USP40-216ENST00000485943 CYP19A1P11511 503 aaPredicted RBP10.39□□□□□ -0.75
USP40-216ENST00000485943 GTF2E1P29083 439 aaPredicted RBP10.39□□□□□ -0.75
USP40-216ENST00000485943 ARHGEF1Q92888 912 aaKnown RBP10.39□□□□□ -0.75
USP40-216ENST00000485943 BABAM1Q9NWV8 329 aa10.39□□□□□ -0.75
USP40-216ENST00000485943 SIPA1L3O60292 1781 aaPredicted RBP10.39□□□□□ -0.75
USP40-216ENST00000485943 COL15A1P39059 1388 aa10.39□□□□□ -0.75
USP40-216ENST00000485943 ADAMTS7Q9UKP4 1686 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 KCNQ3O43525 872 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 MYL6BP14649 208 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 EVX2Q03828 476 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 CCDC184Q52MB2 194 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 BICDL1Q6ZP65 573 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 NECTIN2Q92692 538 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 PDGFDQ9GZP0 370 aaPredicted RBP10.38□□□□□ -0.75
USP40-216ENST00000485943 ZBTB1Q9Y2K1 713 aa10.38□□□□□ -0.75
USP40-216ENST00000485943 COL5A3P25940 1745 aaPredicted RBP10.38□□□□□ -0.75
USP40-216ENST00000485943 CASZ1Q86V15 1759 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 UBR2Q8IWV8 1755 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 CCER2I3L3R5 266 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 MMP10P09238 476 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 IL6STP40189 918 aaPredicted RBP10.37□□□□□ -0.75
USP40-216ENST00000485943 TJP1Q07157 1748 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 MKRN3Q13064 507 aaKnown RBP10.37□□□□□ -0.75
USP40-216ENST00000485943 USPL1Q5W0Q7 1092 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 DZIP3Q86Y13 1208 aaKnown RBP10.37□□□□□ -0.75
USP40-216ENST00000485943 IFT57Q9NWB7 429 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 KCPQ6ZWJ8 1503 aa10.37□□□□□ -0.75
USP40-216ENST00000485943 A1BGP04217 495 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 EIF4A1P60842 406 aaKnown RBP10.36□□□□□ -0.75
USP40-216ENST00000485943 GPR162Q16538 588 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 HDGFL1Q5TGJ6 251 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 SMIM5Q71RC9 77 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 SLC4A9Q96Q91 983 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 STK31Q9BXU1 1019 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 FHDC1Q9C0D6 1143 aaPredicted RBP10.36□□□□□ -0.75
USP40-216ENST00000485943 CRISPLD2Q9H0B8 497 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 MYH16Q9H6N6 1097 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 TBC1D2BQ9UPU7 963 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 USP16Q9Y5T5 823 aa10.36□□□□□ -0.75
USP40-216ENST00000485943 PIP4K2AP48426 406 aaPredicted RBP10.35□□□□□ -0.75
USP40-216ENST00000485943 MFSD10Q14728 455 aa10.35□□□□□ -0.75
USP40-216ENST00000485943 INTS5Q6P9B9 1019 aaKnown RBP10.35□□□□□ -0.75
USP40-216ENST00000485943 SETDB2Q96T68 719 aa10.35□□□□□ -0.75
USP40-216ENST00000485943 SRP68Q9UHB9 627 aaKnown RBP10.35□□□□□ -0.75
USP40-216ENST00000485943 NARFQ9UHQ1 456 aa10.35□□□□□ -0.75
USP40-216ENST00000485943 SOS1Q07889 1333 aaPredicted RBP10.34□□□□□ -0.75
USP40-216ENST00000485943 USP42Q9H9J4 1324 aaKnown RBP10.34□□□□□ -0.75
USP40-216ENST00000485943 LAMB4A4D0S4 1761 aa10.34□□□□□ -0.75
USP40-216ENST00000485943 KDM3BQ7LBC6 1761 aa10.34□□□□□ -0.75
USP40-216ENST00000485943 MYH14Q7Z406 1995 aaKnown RBP10.34□□□□□ -0.75
USP40-216ENST00000485943 ELL2O00472 640 aaPredicted RBP10.34□□□□□ -0.75
USP40-216ENST00000485943 GIGYF1O75420 1035 aaPredicted RBP10.34□□□□□ -0.75
USP40-216ENST00000485943 ST5P78524 1137 aa10.34□□□□□ -0.75
USP40-216ENST00000485943 AIMP1Q12904 312 aaKnown RBP10.34□□□□□ -0.75
USP40-216ENST00000485943 E2F4Q16254 413 aa10.34□□□□□ -0.75
USP40-216ENST00000485943 TRIM35Q9UPQ4 493 aa10.34□□□□□ -0.75
USP40-216ENST00000485943 PRAMEF22A3QJZ6 481 aa10.33□□□□□ -0.76
USP40-216ENST00000485943 FAM177BA6PVY3 158 aa10.33□□□□□ -0.76
USP40-216ENST00000485943 GYS1P13807 737 aa10.33□□□□□ -0.76
USP40-216ENST00000485943 CCDC30Q5VVM6 783 aa10.33□□□□□ -0.76
USP40-216ENST00000485943 MBIPQ9NS73 344 aa10.33□□□□□ -0.76
USP40-216ENST00000485943 ERBB4Q15303 1308 aa10.33□□□□□ -0.76
USP40-216ENST00000485943 CHL1O00533 1208 aa10.32□□□□□ -0.76
USP40-216ENST00000485943 DDX58O95786 925 aaKnown RBP10.32□□□□□ -0.76
USP40-216ENST00000485943 CCDC27Q2M243 656 aa10.32□□□□□ -0.76
USP40-216ENST00000485943 DUSP27Q5VZP5 1158 aa10.32□□□□□ -0.76
USP40-216ENST00000485943 NBPF5PQ86XG9 351 aaPredicted RBP10.32□□□□□ -0.76
USP40-216ENST00000485943 WWC1Q8IX03 1113 aa10.32□□□□□ -0.76
USP40-216ENST00000485943 SYT17Q9BSW7 474 aa10.32□□□□□ -0.76
USP40-216ENST00000485943 DBF4Q9UBU7 674 aaPredicted RBP10.32□□□□□ -0.76
USP40-216ENST00000485943 C4AP0C0L4 1744 aa10.32□□□□□ -0.76
USP40-216ENST00000485943 CICQ96RK0 1608 aaPredicted RBP10.32□□□□□ -0.76
USP40-216ENST00000485943 HOXB7P09629 217 aa10.31□□□□□ -0.76
USP40-216ENST00000485943 PTGER2P43116 358 aa10.31□□□□□ -0.76
USP40-216ENST00000485943 EIF5P55010 431 aaKnown RBP10.31□□□□□ -0.76
USP40-216ENST00000485943 HSP90AB3PQ58FF7 597 aa10.31□□□□□ -0.76
USP40-216ENST00000485943 WDR63Q8IWG1 891 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms