RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 BCORQ6W2J9 1755 aa20.43■□□□□ 0.86
CCDC28B-205ENST00000483009 HOXB7P09629 217 aa20.42■□□□□ 0.86
CCDC28B-205ENST00000483009 HLFQ16534 295 aa20.42■□□□□ 0.86
CCDC28B-205ENST00000483009 NIP7Q9Y221 180 aaKnown RBP eCLIP20.42■□□□□ 0.86
CCDC28B-205ENST00000483009 UTRNP46939 3433 aa20.42■□□□□ 0.86
CCDC28B-205ENST00000483009 NPHP1O15259 732 aa20.41■□□□□ 0.86
CCDC28B-205ENST00000483009 CCDC27Q2M243 656 aa20.41■□□□□ 0.86
CCDC28B-205ENST00000483009 PROSER3Q2NL68 480 aa20.41■□□□□ 0.86
CCDC28B-205ENST00000483009 DALRD3Q5D0E6 543 aaKnown RBP20.41■□□□□ 0.86
CCDC28B-205ENST00000483009 LRP10Q7Z4F1 713 aa20.41■□□□□ 0.86
CCDC28B-205ENST00000483009 BRIP1Q9BX63 1249 aa20.41■□□□□ 0.86
CCDC28B-205ENST00000483009 N4BP2Q86UW6 1770 aaPredicted RBP20.41■□□□□ 0.86
CCDC28B-205ENST00000483009 AFDNP55196 1824 aaKnown RBP20.4■□□□□ 0.86
CCDC28B-205ENST00000483009 ST5P78524 1137 aa20.4■□□□□ 0.86
CCDC28B-205ENST00000483009 NBPF5PQ86XG9 351 aaPredicted RBP20.4■□□□□ 0.86
CCDC28B-205ENST00000483009 C2CD5Q86YS7 1000 aa20.4■□□□□ 0.86
CCDC28B-205ENST00000483009 NECTIN2Q92692 538 aa20.4■□□□□ 0.86
CCDC28B-205ENST00000483009 CHD4Q14839 1912 aa20.39■□□□□ 0.86
CCDC28B-205ENST00000483009 ANXA1P04083 346 aa20.39■□□□□ 0.85
CCDC28B-205ENST00000483009 NCBP3Q53F19 620 aaKnown RBP20.39■□□□□ 0.85
CCDC28B-205ENST00000483009 HDGFL1Q5TGJ6 251 aa20.39■□□□□ 0.85
CCDC28B-205ENST00000483009 DUSP27Q5VZP5 1158 aa20.39■□□□□ 0.85
CCDC28B-205ENST00000483009 CCDC24Q8N4L8 307 aa20.39■□□□□ 0.85
CCDC28B-205ENST00000483009 ZBTB3Q9H5J0 574 aa20.39■□□□□ 0.85
CCDC28B-205ENST00000483009 PDZRN3Q9UPQ7 1066 aa20.39■□□□□ 0.85
CCDC28B-205ENST00000483009 GOLGB1Q14789 3259 aaKnown RBP20.38■□□□□ 0.85
CCDC28B-205ENST00000483009 SENP3-EIF4A1A0A087X0R7 540 aa20.38■□□□□ 0.85
CCDC28B-205ENST00000483009 H0YIN7 160 aa20.38■□□□□ 0.85
CCDC28B-205ENST00000483009 PDE6BP35913 854 aa20.38■□□□□ 0.85
CCDC28B-205ENST00000483009 ZNF784Q8NCA9 323 aaPredicted RBP20.38■□□□□ 0.85
CCDC28B-205ENST00000483009 DDX21Q9NR30 783 aaKnown RBP eCLIP20.38■□□□□ 0.85
CCDC28B-205ENST00000483009 ATP10DQ9P241 1426 aa20.37■□□□□ 0.85
CCDC28B-205ENST00000483009 WWC1Q8IX03 1113 aa20.37■□□□□ 0.85
CCDC28B-205ENST00000483009 TPTE2Q6XPS3 522 aa20.36■□□□□ 0.85
CCDC28B-205ENST00000483009 GIGYF2Q6Y7W6 1299 aaKnown RBP20.36■□□□□ 0.85
CCDC28B-205ENST00000483009 FAM9BQ8IZU0 186 aa20.36■□□□□ 0.85
CCDC28B-205ENST00000483009 CHPF2Q9P2E5 772 aa20.36■□□□□ 0.85
CCDC28B-205ENST00000483009 ARHGAP27Q6ZUM4 889 aa20.35■□□□□ 0.85
CCDC28B-205ENST00000483009 COPS6Q7L5N1 327 aa20.35■□□□□ 0.85
CCDC28B-205ENST00000483009 TTLL6Q8N841 843 aa20.35■□□□□ 0.85
CCDC28B-205ENST00000483009 XAGE3Q8WTP9 111 aa20.35■□□□□ 0.85
CCDC28B-205ENST00000483009 FAM177BA6PVY3 158 aa20.34■□□□□ 0.85
CCDC28B-205ENST00000483009 DBF4Q9UBU7 674 aaPredicted RBP20.34■□□□□ 0.85
CCDC28B-205ENST00000483009 BRCA1P38398 1863 aaKnown RBP20.34■□□□□ 0.85
CCDC28B-205ENST00000483009 IL16Q14005 1332 aa20.33■□□□□ 0.85
CCDC28B-205ENST00000483009 GPTP24298 496 aa20.33■□□□□ 0.85
CCDC28B-205ENST00000483009 AIMP1Q12904 312 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-205ENST00000483009 ZNF34Q8IZ26 560 aa20.33■□□□□ 0.85
CCDC28B-205ENST00000483009 ZNF622Q969S3 477 aaKnown RBP eCLIP20.33■□□□□ 0.859e-11■■■■□ 21.4
CCDC28B-205ENST00000483009 NYXQ9GZU5 481 aa20.33■□□□□ 0.85
CCDC28B-205ENST00000483009 UBN2Q6ZU65 1347 aa20.32■□□□□ 0.84
CCDC28B-205ENST00000483009 GTF2E1P29083 439 aaPredicted RBP20.32■□□□□ 0.84
CCDC28B-205ENST00000483009 ADCY9O60503 1353 aa20.32■□□□□ 0.84
CCDC28B-205ENST00000483009 IBTKQ9P2D0 1353 aaPredicted RBP20.32■□□□□ 0.84
CCDC28B-205ENST00000483009 ELL2O00472 640 aaPredicted RBP20.31■□□□□ 0.84
CCDC28B-205ENST00000483009 SRGNP10124 158 aa20.31■□□□□ 0.84
CCDC28B-205ENST00000483009 PARP10Q53GL7 1025 aa20.31■□□□□ 0.84
CCDC28B-205ENST00000483009 C8orf58Q8NAV2 365 aa20.31■□□□□ 0.84
CCDC28B-205ENST00000483009 TSR2Q969E8 191 aaKnown RBP20.31■□□□□ 0.84
CCDC28B-205ENST00000483009 KLRG2A4D1S0 409 aaPredicted RBP20.3■□□□□ 0.84
CCDC28B-205ENST00000483009 HSP90AB3PQ58FF7 597 aa20.3■□□□□ 0.84
CCDC28B-205ENST00000483009 STYK1Q6J9G0 422 aa20.3■□□□□ 0.84
CCDC28B-205ENST00000483009 MASTLQ96GX5 879 aa20.3■□□□□ 0.84
CCDC28B-205ENST00000483009 HYPKQ9NX55 129 aa20.3■□□□□ 0.84
CCDC28B-205ENST00000483009 SALL2Q9Y467 1007 aaPredicted RBP20.3■□□□□ 0.84
CCDC28B-205ENST00000483009 ANKRD31Q8N7Z5 1873 aa20.3■□□□□ 0.84
CCDC28B-205ENST00000483009 SUSD4Q5VX71 490 aa20.29■□□□□ 0.84
CCDC28B-205ENST00000483009 NUTM1Q86Y26 1132 aa20.29■□□□□ 0.84
CCDC28B-205ENST00000483009 WDR63Q8IWG1 891 aa20.29■□□□□ 0.84
CCDC28B-205ENST00000483009 CNKSR1Q969H4 720 aa20.29■□□□□ 0.84
CCDC28B-205ENST00000483009 CHMP4AQ9BY43 222 aa20.29■□□□□ 0.84
CCDC28B-205ENST00000483009 ABCC12Q96J65 1359 aa20.29■□□□□ 0.84
CCDC28B-205ENST00000483009 ARFGEF1Q9Y6D6 1849 aa20.28■□□□□ 0.84
CCDC28B-205ENST00000483009 NTSR2O95665 410 aa20.28■□□□□ 0.84
CCDC28B-205ENST00000483009 PPP1R42Q7Z4L9 355 aa20.28■□□□□ 0.84
CCDC28B-205ENST00000483009 TSPYL6Q8N831 410 aa20.28■□□□□ 0.84
CCDC28B-205ENST00000483009 DLEC1Q9Y238 1755 aa20.27■□□□□ 0.84
CCDC28B-205ENST00000483009 NPR1P16066 1061 aa20.27■□□□□ 0.84
CCDC28B-205ENST00000483009 TCIRG1Q13488 830 aa20.27■□□□□ 0.84
CCDC28B-205ENST00000483009 ERFEQ4G0M1 354 aa20.27■□□□□ 0.84
CCDC28B-205ENST00000483009 PLBD2Q8NHP8 589 aa20.27■□□□□ 0.84
CCDC28B-205ENST00000483009 NUP98P52948 1817 aa20.26■□□□□ 0.83
CCDC28B-205ENST00000483009 CCDC30Q5VVM6 783 aa20.26■□□□□ 0.83
CCDC28B-205ENST00000483009 ANKRD13DQ6ZTN6 518 aa20.26■□□□□ 0.83
CCDC28B-205ENST00000483009 COL11A2P13942 1736 aaPredicted RBP20.25■□□□□ 0.83
CCDC28B-205ENST00000483009 C9orf131Q5VYM1 1079 aa20.25■□□□□ 0.83
CCDC28B-205ENST00000483009 PRPF40BQ6NWY9 871 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-205ENST00000483009 UTP14AQ9BVJ6 771 aaKnown RBP20.25■□□□□ 0.83
CCDC28B-205ENST00000483009 RIC1Q4ADV7 1423 aa20.25■□□□□ 0.83
CCDC28B-205ENST00000483009 FANCIQ9NVI1 1328 aa20.25■□□□□ 0.83
CCDC28B-205ENST00000483009 NLRP10Q86W26 655 aa20.24■□□□□ 0.83
CCDC28B-205ENST00000483009 RNF123Q5XPI4 1314 aa20.24■□□□□ 0.83
CCDC28B-205ENST00000483009 CCER2I3L3R5 266 aa20.23■□□□□ 0.83
CCDC28B-205ENST00000483009 C21orf2O43822 256 aa20.23■□□□□ 0.83
CCDC28B-205ENST00000483009 RASSF7Q02833 373 aa20.23■□□□□ 0.83
CCDC28B-205ENST00000483009 GOLGA2Q08379 1002 aa20.23■□□□□ 0.83
CCDC28B-205ENST00000483009 TWISTNBQ3B726 338 aaPredicted RBP20.23■□□□□ 0.83
CCDC28B-205ENST00000483009 CRY2Q49AN0 593 aa20.23■□□□□ 0.83
CCDC28B-205ENST00000483009 ZNF219Q9P2Y4 722 aaPredicted RBP20.23■□□□□ 0.83
CCDC28B-205ENST00000483009 NFKBIEO00221 500 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 162.4 ms