RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 ELOA3Q8NG57 546 aa11.29□□□□□ -0.6
SCN9A-206ENST00000472119 GAPVD1Q14C86 1478 aa11.28□□□□□ -0.6
SCN9A-206ENST00000472119 BTBD11A6QL63 1104 aa11.28□□□□□ -0.6
SCN9A-206ENST00000472119 GPR37L1O60883 481 aa11.28□□□□□ -0.6
SCN9A-206ENST00000472119 NBPF1Q3BBV0 1214 aa11.28□□□□□ -0.6
SCN9A-206ENST00000472119 NDUFB9Q9Y6M9 179 aa11.28□□□□□ -0.6
SCN9A-206ENST00000472119 FAM157BP0CG42 384 aa11.27□□□□□ -0.61
SCN9A-206ENST00000472119 OXLD1Q5BKU9 147 aa11.27□□□□□ -0.61
SCN9A-206ENST00000472119 MARK1Q9P0L2 795 aa11.27□□□□□ -0.61
SCN9A-206ENST00000472119 TATP17735 454 aaPredicted RBP11.26□□□□□ -0.61
SCN9A-206ENST00000472119 NACC1Q96RE7 527 aa11.26□□□□□ -0.61
SCN9A-206ENST00000472119 STRN4Q9NRL3 753 aa11.26□□□□□ -0.61
SCN9A-206ENST00000472119 WDR97A6NE52 1622 aa11.25□□□□□ -0.61
SCN9A-206ENST00000472119 GDF10P55107 478 aa11.25□□□□□ -0.61
SCN9A-206ENST00000472119 SYT9Q86SS6 491 aa11.25□□□□□ -0.61
SCN9A-206ENST00000472119 GOPCQ9HD26 462 aa11.25□□□□□ -0.61
SCN9A-206ENST00000472119 GRIN2BQ13224 1484 aa11.25□□□□□ -0.61
SCN9A-206ENST00000472119 INHAP05111 366 aa11.24□□□□□ -0.61
SCN9A-206ENST00000472119 SCNN1DP51172 638 aa11.24□□□□□ -0.61
SCN9A-206ENST00000472119 TRIM28Q13263 835 aaKnown RBP11.24□□□□□ -0.61
SCN9A-206ENST00000472119 ZIC5Q96T25 663 aa11.24□□□□□ -0.61
SCN9A-206ENST00000472119 KRTAP9-9Q9BYP9 154 aa11.24□□□□□ -0.61
SCN9A-206ENST00000472119 KRTAP9-4Q9BYQ2 154 aa11.24□□□□□ -0.61
SCN9A-206ENST00000472119 M0R082 166 aa11.23□□□□□ -0.61
SCN9A-206ENST00000472119 GRIK4Q16099 956 aa11.23□□□□□ -0.61
SCN9A-206ENST00000472119 ZNF417Q8TAU3 575 aa11.23□□□□□ -0.61
SCN9A-206ENST00000472119 ZNF587Q96SQ5 575 aaPredicted RBP11.23□□□□□ -0.61
SCN9A-206ENST00000472119 LRP8Q14114 963 aa11.22□□□□□ -0.61
SCN9A-206ENST00000472119 SLFNL1Q499Z3 407 aa11.22□□□□□ -0.61
SCN9A-206ENST00000472119 SNAPC4Q5SXM2 1469 aa11.22□□□□□ -0.61
SCN9A-206ENST00000472119 SIRT1Q96EB6 747 aa11.22□□□□□ -0.61
SCN9A-206ENST00000472119 ABCA5Q8WWZ7 1642 aa11.21□□□□□ -0.61
SCN9A-206ENST00000472119 KIF27Q86VH2 1401 aa11.21□□□□□ -0.61
SCN9A-206ENST00000472119 SMTNP53814 917 aa11.21□□□□□ -0.61
SCN9A-206ENST00000472119 BICDL1Q6ZP65 573 aa11.21□□□□□ -0.61
SCN9A-206ENST00000472119 CHMP7Q8WUX9 453 aaPredicted RBP11.21□□□□□ -0.61
SCN9A-206ENST00000472119 MTMR14Q8NCE2 650 aa11.2□□□□□ -0.62
SCN9A-206ENST00000472119 ZDHHC3Q9NYG2 299 aa11.2□□□□□ -0.62
SCN9A-206ENST00000472119 SERTAD1Q9UHV2 236 aa11.2□□□□□ -0.62
SCN9A-206ENST00000472119 LAMC2Q13753 1193 aa11.19□□□□□ -0.62
SCN9A-206ENST00000472119 C8orf86Q6ZUL3 223 aa11.19□□□□□ -0.62
SCN9A-206ENST00000472119 KRTAP19-1Q8IUB9 90 aa11.19□□□□□ -0.62
SCN9A-206ENST00000472119 PHTF2Q8N3S3 785 aa11.19□□□□□ -0.62
SCN9A-206ENST00000472119 CABP1Q9NZU7 370 aa11.19□□□□□ -0.62
SCN9A-206ENST00000472119 RUSC2Q8N2Y8 1516 aa11.19□□□□□ -0.62
SCN9A-206ENST00000472119 EFSO43281 561 aa11.18□□□□□ -0.62
SCN9A-206ENST00000472119 COL9A3Q14050 684 aaPredicted RBP11.18□□□□□ -0.62
SCN9A-206ENST00000472119 SAMD5Q5TGI4 173 aa11.18□□□□□ -0.62
SCN9A-206ENST00000472119 MAGI1Q96QZ7 1491 aaPredicted RBP11.18□□□□□ -0.62
SCN9A-206ENST00000472119 HYAL3O43820 417 aaPredicted RBP11.17□□□□□ -0.62
SCN9A-206ENST00000472119 MDFIQ99750 246 aa11.17□□□□□ -0.62
SCN9A-206ENST00000472119 PBRM1Q86U86 1689 aa11.17□□□□□ -0.62
SCN9A-206ENST00000472119 ERICH3Q5RHP9 1530 aa11.16□□□□□ -0.62
SCN9A-206ENST00000472119 SIN3BO75182 1162 aa11.16□□□□□ -0.62
SCN9A-206ENST00000472119 ALBP02768 609 aa11.16□□□□□ -0.62
SCN9A-206ENST00000472119 H2AFB1P0C5Y9 115 aa11.16□□□□□ -0.62
SCN9A-206ENST00000472119 H2AFB2P0C5Z0 115 aa11.16□□□□□ -0.62
SCN9A-206ENST00000472119 GOLGA2P5Q9HBQ8 144 aa11.16□□□□□ -0.62
SCN9A-206ENST00000472119 USP3Q9Y6I4 520 aa11.16□□□□□ -0.62
SCN9A-206ENST00000472119 SYNJ2O15056 1496 aa11.15□□□□□ -0.62
SCN9A-206ENST00000472119 APBB1O00213 710 aa11.15□□□□□ -0.62
SCN9A-206ENST00000472119 EIF4G2P78344 907 aaKnown RBP eCLIP11.15□□□□□ -0.62
SCN9A-206ENST00000472119 FAM9AQ8IZU1 332 aaPredicted RBP11.15□□□□□ -0.62
SCN9A-206ENST00000472119 ZNF295-AS1Q8N0V1 137 aa11.15□□□□□ -0.62
SCN9A-206ENST00000472119 BANK1Q8NDB2 785 aa11.15□□□□□ -0.62
SCN9A-206ENST00000472119 STARD13Q9Y3M8 1113 aa11.15□□□□□ -0.62
SCN9A-206ENST00000472119 PARP3Q9Y6F1 533 aa11.15□□□□□ -0.62
SCN9A-206ENST00000472119 ADARB2-AS1A8MUL3 147 aa11.14□□□□□ -0.63
SCN9A-206ENST00000472119 MICALL1Q8N3F8 863 aa11.14□□□□□ -0.63
SCN9A-206ENST00000472119 PRDM6Q9NQX0 595 aa11.14□□□□□ -0.63
SCN9A-206ENST00000472119 FHAD1B1AJZ9 1412 aa11.14□□□□□ -0.63
SCN9A-206ENST00000472119 A6NJY4 79 aa11.13□□□□□ -0.63
SCN9A-206ENST00000472119 C9orf172C9J069 976 aa11.13□□□□□ -0.63
SCN9A-206ENST00000472119 SOCS7O14512 581 aa11.13□□□□□ -0.63
SCN9A-206ENST00000472119 CDK2AP1O14519 115 aa11.13□□□□□ -0.63
SCN9A-206ENST00000472119 NID1P14543 1247 aa11.13□□□□□ -0.63
SCN9A-206ENST00000472119 IQSEC3Q9UPP2 1182 aaPredicted RBP11.13□□□□□ -0.63
SCN9A-206ENST00000472119 TRAPPC3LQ5T215 181 aa11.12□□□□□ -0.63
SCN9A-206ENST00000472119 SNRKQ9NRH2 765 aa11.12□□□□□ -0.63
SCN9A-206ENST00000472119 CARMIL1Q5VZK9 1371 aa11.12□□□□□ -0.63
SCN9A-206ENST00000472119 CHD1O14646 1710 aa11.12□□□□□ -0.63
SCN9A-206ENST00000472119 ADAMTS12P58397 1594 aa11.11□□□□□ -0.63
SCN9A-206ENST00000472119 TXLNAP40222 546 aa11.11□□□□□ -0.63
SCN9A-206ENST00000472119 ADGRE1Q14246 886 aa11.11□□□□□ -0.63
SCN9A-206ENST00000472119 MBTPS1Q14703 1052 aa11.11□□□□□ -0.63
SCN9A-206ENST00000472119 LRRC69Q6ZNQ3 347 aa11.11□□□□□ -0.63
SCN9A-206ENST00000472119 TNFRSF25Q93038 417 aa11.11□□□□□ -0.63
SCN9A-206ENST00000472119 MTFR1Q15390 333 aa11.1□□□□□ -0.63
SCN9A-206ENST00000472119 SLC30A3Q99726 388 aa11.1□□□□□ -0.63
SCN9A-206ENST00000472119 GRIN2AQ12879 1464 aa11.1□□□□□ -0.63
SCN9A-206ENST00000472119 KRTAP4-8A0A0G2JLE6 195 aa11.09□□□□□ -0.63
SCN9A-206ENST00000472119 TMEM229AB2RXF0 380 aa11.09□□□□□ -0.63
SCN9A-206ENST00000472119 ADH7P40394 386 aa11.09□□□□□ -0.63
SCN9A-206ENST00000472119 TXNRD3Q86VQ6 643 aa11.09□□□□□ -0.63
SCN9A-206ENST00000472119 TP53INP1Q96A56 240 aa11.09□□□□□ -0.63
SCN9A-206ENST00000472119 SLC4A9Q96Q91 983 aa11.09□□□□□ -0.63
SCN9A-206ENST00000472119 SELPP16109 830 aa11.08□□□□□ -0.64
SCN9A-206ENST00000472119 SFSWAPQ12872 951 aaKnown RBP11.08□□□□□ -0.64
SCN9A-206ENST00000472119 IL27Q8NEV9 243 aa11.08□□□□□ -0.64
SCN9A-206ENST00000472119 NEUROD4Q9HD90 331 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms