RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 AEBP2Q6ZN18 517 aaPredicted RBP38.3■■■■□ 3.72
SCN9A-206ENST00000472119 CHIC1Q5VXU3 224 aa35.89■■■■□ 3.34
SCN9A-206ENST00000472119 SENP3Q9H4L4 574 aaPredicted RBP32.76■■■□□ 2.83
SCN9A-206ENST00000472119 PHF23Q9BUL5 403 aaPredicted RBP32.27■■■□□ 2.76
SCN9A-206ENST00000472119 FOXD1Q16676 465 aa30.59■■■□□ 2.49
SCN9A-206ENST00000472119 POTEDQ86YR6 584 aa28.96■■■□□ 2.23
SCN9A-206ENST00000472119 MSH5O43196 834 aa28.82■■■□□ 2.2
SCN9A-206ENST00000472119 PIAS4Q8N2W9 510 aaPredicted RBP28.52■■■□□ 2.16
SCN9A-206ENST00000472119 PLPPR3Q6T4P5 718 aa28.48■■■□□ 2.15
SCN9A-206ENST00000472119 PPP6R1Q9UPN7 881 aa28.23■■■□□ 2.11
SCN9A-206ENST00000472119 ADRA2BP18089 450 aa28.15■■■□□ 2.1
SCN9A-206ENST00000472119 MAPK8IP2Q13387 824 aaPredicted RBP26■■□□□ 1.75
SCN9A-206ENST00000472119 DMRT2Q9Y5R5 561 aa25.89■■□□□ 1.74
SCN9A-206ENST00000472119 SCAF1Q9H7N4 1312 aaKnown RBP25.74■■□□□ 1.71
SCN9A-206ENST00000472119 CACNB1Q02641 598 aaPredicted RBP25.08■■□□□ 1.61
SCN9A-206ENST00000472119 DCAF8L1A6NGE4 600 aa25■■□□□ 1.59
SCN9A-206ENST00000472119 PPP4R3CPQ6ZMV5 832 aa24.91■■□□□ 1.58
SCN9A-206ENST00000472119 HOXD11P31277 338 aaPredicted RBP24.72■■□□□ 1.55
SCN9A-206ENST00000472119 CNKSR2Q8WXI2 1034 aa24.54■■□□□ 1.52
SCN9A-206ENST00000472119 RNF39Q9H2S5 420 aa24.52■■□□□ 1.52
SCN9A-206ENST00000472119 RNF216Q9NWF9 866 aaPredicted RBP24.42■■□□□ 1.5
SCN9A-206ENST00000472119 C1QBPQ07021 282 aaKnown RBP24.14■■□□□ 1.45
SCN9A-206ENST00000472119 DNAJC5BQ9UF47 199 aa23.89■■□□□ 1.41
SCN9A-206ENST00000472119 NCBP3Q53F19 620 aaKnown RBP23.82■■□□□ 1.4
SCN9A-206ENST00000472119 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.66■■□□□ 1.38
SCN9A-206ENST00000472119 NPM3O75607 178 aaKnown RBP23.47■■□□□ 1.35
SCN9A-206ENST00000472119 U3KPZ7 1027 aaPredicted RBP23.06■■□□□ 1.28
SCN9A-206ENST00000472119 CAPN15O75808 1086 aa22.92■■□□□ 1.26
SCN9A-206ENST00000472119 SPINK5Q9NQ38 1064 aaPredicted RBP22.89■■□□□ 1.25
SCN9A-206ENST00000472119 DSG3P32926 999 aa22.82■■□□□ 1.24
SCN9A-206ENST00000472119 POTEHQ6S545 545 aa22.61■■□□□ 1.21
SCN9A-206ENST00000472119 KCNA4P22459 653 aa22.6■■□□□ 1.21
SCN9A-206ENST00000472119 SLC4A2P04920 1241 aa22.51■■□□□ 1.19
SCN9A-206ENST00000472119 TRHP20396 242 aaPredicted RBP22.45■■□□□ 1.18
SCN9A-206ENST00000472119 APLP2Q06481 763 aa22.37■■□□□ 1.17
SCN9A-206ENST00000472119 ABCB7O75027 752 aa22.36■■□□□ 1.17
SCN9A-206ENST00000472119 ZNF219Q9P2Y4 722 aaPredicted RBP22.32■■□□□ 1.16
SCN9A-206ENST00000472119 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.23■■□□□ 1.15
SCN9A-206ENST00000472119 HNRNPUL2Q1KMD3 747 aaKnown RBP22.23■■□□□ 1.15
SCN9A-206ENST00000472119 SAMD1Q6SPF0 538 aaPredicted RBP22.08■■□□□ 1.13
SCN9A-206ENST00000472119 RBM42Q9BTD8 480 aaKnown RBP21.8■■□□□ 1.08
SCN9A-206ENST00000472119 MYCNP04198 464 aaPredicted RBP21.72■■□□□ 1.07
SCN9A-206ENST00000472119 POLA2Q14181 598 aa21.69■■□□□ 1.06
SCN9A-206ENST00000472119 CHRDL2Q6WN34 429 aa21.52■■□□□ 1.04
SCN9A-206ENST00000472119 SLC4A1APQ9BWU0 796 aaKnown RBP21.26■□□□□ 0.99
SCN9A-206ENST00000472119 ATF5Q9Y2D1 282 aaPredicted RBP21.26■□□□□ 0.99
SCN9A-206ENST00000472119 FOXD4L1Q9NU39 408 aa21.24■□□□□ 0.99
SCN9A-206ENST00000472119 AKT1S1Q96B36 256 aa21.19■□□□□ 0.98
SCN9A-206ENST00000472119 ZBTB12Q9Y330 459 aaPredicted RBP21.18■□□□□ 0.98
SCN9A-206ENST00000472119 OSCARQ8IYS5 282 aa21.03■□□□□ 0.96
SCN9A-206ENST00000472119 REM2Q8IYK8 340 aaPredicted RBP21■□□□□ 0.95
SCN9A-206ENST00000472119 SP7Q8TDD2 431 aaPredicted RBP20.97■□□□□ 0.95
SCN9A-206ENST00000472119 PIP4P2Q8N4L2 257 aa20.91■□□□□ 0.94
SCN9A-206ENST00000472119 PITPNM1O00562 1244 aa20.8■□□□□ 0.92
SCN9A-206ENST00000472119 ZBTB22O15209 634 aa20.74■□□□□ 0.91
SCN9A-206ENST00000472119 HAX1O00165 279 aa20.72■□□□□ 0.91
SCN9A-206ENST00000472119 FXR2P51116 673 aaKnown RBP eCLIP20.67■□□□□ 0.9
SCN9A-206ENST00000472119 ATXN8OSP0DMR3 200 aa20.57■□□□□ 0.88
SCN9A-206ENST00000472119 FBLN2P98095 1184 aa20.5■□□□□ 0.87
SCN9A-206ENST00000472119 SPDYE2BA6NHP3 402 aa20.47■□□□□ 0.87
SCN9A-206ENST00000472119 SPDYE6P0CI01 402 aa20.47■□□□□ 0.87
SCN9A-206ENST00000472119 SPDYE2Q495Y8 402 aa20.47■□□□□ 0.87
SCN9A-206ENST00000472119 EVX2Q03828 476 aa20.37■□□□□ 0.85
SCN9A-206ENST00000472119 CLEC11AQ9Y240 323 aa20.33■□□□□ 0.85
SCN9A-206ENST00000472119 PRKAR2AP13861 404 aaKnown RBP20.28■□□□□ 0.84
SCN9A-206ENST00000472119 SPDYE1Q8NFV5 336 aaPredicted RBP20.27■□□□□ 0.84
SCN9A-206ENST00000472119 MKRN4PQ13434 485 aaPredicted RBP20.23■□□□□ 0.83
SCN9A-206ENST00000472119 ZNF692Q9BU19 519 aaPredicted RBP20.21■□□□□ 0.83
SCN9A-206ENST00000472119 SSUH2Q9Y2M2 353 aa20.12■□□□□ 0.81
SCN9A-206ENST00000472119 C19orf67A6NJJ6 358 aa20.03■□□□□ 0.8
SCN9A-206ENST00000472119 CHADLQ6NUI6 762 aa19.97■□□□□ 0.79
SCN9A-206ENST00000472119 GABBR2O75899 941 aa19.89■□□□□ 0.77
SCN9A-206ENST00000472119 PABPN1Q86U42 306 aaKnown RBP eCLIP19.89■□□□□ 0.77
SCN9A-206ENST00000472119 PRR29P0C7W0 189 aa19.88■□□□□ 0.77
SCN9A-206ENST00000472119 LHX8Q68G74 356 aa19.68■□□□□ 0.74
SCN9A-206ENST00000472119 CD44P16070 742 aaKnown RBP19.61■□□□□ 0.73
SCN9A-206ENST00000472119 FARP1Q9Y4F1 1045 aaPredicted RBP19.58■□□□□ 0.72
SCN9A-206ENST00000472119 POTEIP0CG38 1075 aa19.44■□□□□ 0.7
SCN9A-206ENST00000472119 CSRNP3Q8WYN3 585 aa19.35■□□□□ 0.69
SCN9A-206ENST00000472119 CLCN6P51797 869 aa19.34■□□□□ 0.69
SCN9A-206ENST00000472119 DCBLD2Q96PD2 775 aa19.3■□□□□ 0.68
SCN9A-206ENST00000472119 ZRANB1Q9UGI0 708 aa19.27■□□□□ 0.68
SCN9A-206ENST00000472119 ZNF579Q8NAF0 562 aaKnown RBP19.23■□□□□ 0.67
SCN9A-206ENST00000472119 CREBZFQ9NS37 354 aa19.23■□□□□ 0.67
SCN9A-206ENST00000472119 STAG3Q9UJ98 1225 aa19.21■□□□□ 0.67
SCN9A-206ENST00000472119 SPDYE4A6NLX3 237 aa19.08■□□□□ 0.64
SCN9A-206ENST00000472119 GALR2O43603 387 aaPredicted RBP19.07■□□□□ 0.64
SCN9A-206ENST00000472119 PAK3O75914 559 aaPredicted RBP19.02■□□□□ 0.64
SCN9A-206ENST00000472119 PHF12Q96QT6 1004 aa18.96■□□□□ 0.63
SCN9A-206ENST00000472119 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
SCN9A-206ENST00000472119 PLSCR2Q9NRY7 297 aa18.9■□□□□ 0.62
SCN9A-206ENST00000472119 NPM1P06748 294 aaKnown RBP eCLIP18.89■□□□□ 0.61
SCN9A-206ENST00000472119 OTUD5Q96G74 571 aa18.83■□□□□ 0.6
SCN9A-206ENST00000472119 POTEB2H3BUK9 544 aa18.8■□□□□ 0.6
SCN9A-206ENST00000472119 MNX1P50219 401 aaPredicted RBP18.8■□□□□ 0.6
SCN9A-206ENST00000472119 PELP1Q8IZL8 1130 aaKnown RBP18.73■□□□□ 0.59
SCN9A-206ENST00000472119 MS4A3Q96HJ5 214 aa18.67■□□□□ 0.58
SCN9A-206ENST00000472119 METRNQ9UJH8 293 aa18.61■□□□□ 0.57
SCN9A-206ENST00000472119 ASTLQ6HA08 431 aaPredicted RBP18.59■□□□□ 0.57
SCN9A-206ENST00000472119 TSPYL2Q9H2G4 693 aaPredicted RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms