RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 ZDHHC3Q9NYG2 299 aa7.58□□□□□ -1.2
HERC4-208ENST00000463478 C11orf95C9JLR9 678 aaPredicted RBP7.57□□□□□ -1.2
HERC4-208ENST00000463478 NPR3P17342 541 aa7.57□□□□□ -1.2
HERC4-208ENST00000463478 NOM1Q5C9Z4 860 aaKnown RBP7.57□□□□□ -1.2
HERC4-208ENST00000463478 BICDL1Q6ZP65 573 aa7.57□□□□□ -1.2
HERC4-208ENST00000463478 EIF1AXP47813 144 aaKnown RBP7.56□□□□□ -1.2
HERC4-208ENST00000463478 WDR44Q5JSH3 913 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 FAM26DQ5JW98 314 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 ALKBH2Q6NS38 261 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 IFT43Q96FT9 208 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 TRIM47Q96LD4 638 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 SENP2Q9HC62 589 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 DCTN4Q9UJW0 460 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 DNMT3LQ9UJW3 386 aa7.56□□□□□ -1.2
HERC4-208ENST00000463478 A0A1B0GTH6 734 aa7.55□□□□□ -1.2
HERC4-208ENST00000463478 ATP4AP20648 1035 aa7.55□□□□□ -1.2
HERC4-208ENST00000463478 ARSJQ5FYB0 599 aaPredicted RBP7.55□□□□□ -1.2
HERC4-208ENST00000463478 DNAJC14Q6Y2X3 702 aaPredicted RBP7.55□□□□□ -1.2
HERC4-208ENST00000463478 ATCAYQ86WG3 371 aa7.55□□□□□ -1.2
HERC4-208ENST00000463478 ETFBKMTQ8IXQ9 262 aa7.55□□□□□ -1.2
HERC4-208ENST00000463478 HSH2DQ96JZ2 352 aa7.55□□□□□ -1.2
HERC4-208ENST00000463478 ZBTB39O15060 712 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 NDUFB5O43674 189 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 MAN1A2O60476 641 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 MSX1P28360 303 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 HIF1AQ16665 826 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.54□□□□□ -1.2
HERC4-208ENST00000463478 KIFC2Q96AC6 838 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 GPAMQ9HCL2 828 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 NEUROD4Q9HD90 331 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 BRPF3Q9ULD4 1205 aa7.54□□□□□ -1.2
HERC4-208ENST00000463478 SOBPA7XYQ1 873 aa7.53□□□□□ -1.2
HERC4-208ENST00000463478 SNRPBP14678 240 aaKnown RBP7.53□□□□□ -1.2
HERC4-208ENST00000463478 ZAP70P43403 619 aa7.53□□□□□ -1.2
HERC4-208ENST00000463478 TREML1Q86YW5 311 aa7.53□□□□□ -1.2
HERC4-208ENST00000463478 KLRG1Q96E93 195 aa7.53□□□□□ -1.2
HERC4-208ENST00000463478 SUSD3Q96L08 255 aa7.53□□□□□ -1.2
HERC4-208ENST00000463478 GAS2L1Q99501 681 aaPredicted RBP7.53□□□□□ -1.2
HERC4-208ENST00000463478 CCDC87Q9NVE4 849 aa7.53□□□□□ -1.2
HERC4-208ENST00000463478 BCS1LQ9Y276 419 aa7.53□□□□□ -1.2
HERC4-208ENST00000463478 ANKRD33BA6NCL7 494 aa7.52□□□□□ -1.21
HERC4-208ENST00000463478 FZD6O60353 706 aa7.52□□□□□ -1.21
HERC4-208ENST00000463478 NPM2Q86SE8 214 aaKnown RBP7.52□□□□□ -1.21
HERC4-208ENST00000463478 ZSCAN29Q8IWY8 852 aaPredicted RBP7.52□□□□□ -1.21
HERC4-208ENST00000463478 ZNF280CQ8ND82 737 aa7.52□□□□□ -1.21
HERC4-208ENST00000463478 TMC1Q8TDI8 760 aa7.52□□□□□ -1.21
HERC4-208ENST00000463478 C7orf43Q8WVR3 580 aa7.52□□□□□ -1.21
HERC4-208ENST00000463478 ZIC5Q96T25 663 aa7.52□□□□□ -1.21
HERC4-208ENST00000463478 GPC6Q9Y625 555 aaPredicted RBP7.52□□□□□ -1.21
HERC4-208ENST00000463478 A0A1W2PNR3 127 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 TGFBR3LH3BV60 316 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 ERCC3P19447 782 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 DNM1Q05193 864 aaKnown RBP7.51□□□□□ -1.21
HERC4-208ENST00000463478 LRRC69Q6ZNQ3 347 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 PGBD3Q8N328 593 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 ASB16Q96NS5 453 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 RUBCNLQ9H714 662 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 DYRK1BQ9Y463 629 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 GJA3Q9Y6H8 435 aa7.51□□□□□ -1.21
HERC4-208ENST00000463478 MICAL2O94851 1124 aa7.5□□□□□ -1.21
HERC4-208ENST00000463478 GPR152Q8TDT2 470 aa7.5□□□□□ -1.21
HERC4-208ENST00000463478 EDEM1Q92611 657 aa7.5□□□□□ -1.21
HERC4-208ENST00000463478 ANKIB1Q9P2G1 1089 aa7.5□□□□□ -1.21
HERC4-208ENST00000463478 POLIQ9UNA4 740 aa7.5□□□□□ -1.21
HERC4-208ENST00000463478 F11P03951 625 aa7.49□□□□□ -1.21
HERC4-208ENST00000463478 IDH3AP50213 366 aa7.49□□□□□ -1.21
HERC4-208ENST00000463478 TMC7Q7Z402 723 aa7.49□□□□□ -1.21
HERC4-208ENST00000463478 RGL4Q8IZJ4 473 aa7.49□□□□□ -1.21
HERC4-208ENST00000463478 RBCK1Q9BYM8 510 aa7.49□□□□□ -1.21
HERC4-208ENST00000463478 SENP3-EIF4A1A0A087X0R7 540 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 PDGFAP04085 211 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 MZF1P28698 734 aaPredicted RBP7.48□□□□□ -1.21
HERC4-208ENST00000463478 RBM25P49756 843 aaKnown RBP7.48□□□□□ -1.21
HERC4-208ENST00000463478 LCE2AQ5TA79 106 aaPredicted RBP7.48□□□□□ -1.21
HERC4-208ENST00000463478 IER5Q5VY09 327 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 RIPOR1Q6ZS17 1223 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 NPAS4Q8IUM7 802 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 ZNF428Q96B54 188 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 CRISPLD1Q9H336 500 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 FAM13BQ9NYF5 915 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 AMOTL2Q9Y2J4 779 aa7.48□□□□□ -1.21
HERC4-208ENST00000463478 PCSK2P16519 638 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 ARSDP51689 593 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 PTSQ03393 145 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 EFHC2Q5JST6 749 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 TREML4Q6UXN2 200 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 BTLAQ7Z6A9 289 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 NUDT16Q96DE0 195 aaKnown RBP7.47□□□□□ -1.21
HERC4-208ENST00000463478 CITED4Q96RK1 184 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 BCL2L13Q9BXK5 485 aa7.47□□□□□ -1.21
HERC4-208ENST00000463478 DMGDHQ9UI17 866 aaKnown RBP7.47□□□□□ -1.21
HERC4-208ENST00000463478 PDE3BQ13370 1112 aa7.46□□□□□ -1.22
HERC4-208ENST00000463478 TTC16Q8NEE8 873 aa7.46□□□□□ -1.22
HERC4-208ENST00000463478 PIK3R5Q8WYR1 880 aa7.46□□□□□ -1.22
HERC4-208ENST00000463478 CEP63Q96MT8 703 aa7.46□□□□□ -1.22
HERC4-208ENST00000463478 USP20Q9Y2K6 914 aa7.46□□□□□ -1.22
HERC4-208ENST00000463478 SLC35F4A4IF30 521 aa7.45□□□□□ -1.22
HERC4-208ENST00000463478 OPLAHO14841 1288 aa7.45□□□□□ -1.22
HERC4-208ENST00000463478 USP5P45974 858 aa7.45□□□□□ -1.22
HERC4-208ENST00000463478 NFX1Q12986 1120 aaKnown RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms