RNA–Protein interactions for RNA: ENST00000461004.1

RTN4-212, Transcript of reticulon 4, humanhuman

TSL 3

Gene RTN4, Length 422 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-212ENST00000461004 SHANK3Q9BYB0 1731 aa9.77□□□□□ -0.85
RTN4-212ENST00000461004 EP400Q96L91 3159 aa9.77□□□□□ -0.85
RTN4-212ENST00000461004 U2AF1L5P0DN76 240 aaPredicted RBP9.77□□□□□ -0.85
RTN4-212ENST00000461004 U2AF1Q01081 240 aaKnown RBP eCLIP9.77□□□□□ -0.85
RTN4-212ENST00000461004 PHACTR3Q96KR7 559 aa9.77□□□□□ -0.85
RTN4-212ENST00000461004 TRIM6-TRIM34B2RNG4 842 aa9.76□□□□□ -0.85
RTN4-212ENST00000461004 APBA3O96018 575 aa9.76□□□□□ -0.85
RTN4-212ENST00000461004 PHKG2P15735 406 aa9.76□□□□□ -0.85
RTN4-212ENST00000461004 MTHFSDQ2M296 383 aaKnown RBP9.76□□□□□ -0.85
RTN4-212ENST00000461004 PLEKHO1Q53GL0 409 aaPredicted RBP9.76□□□□□ -0.85
RTN4-212ENST00000461004 NLRP7Q8WX94 980 aa9.76□□□□□ -0.85
RTN4-212ENST00000461004 RSPH6AQ9H0K4 717 aa9.76□□□□□ -0.85
RTN4-212ENST00000461004 SPG7Q9UQ90 795 aa9.76□□□□□ -0.85
RTN4-212ENST00000461004 KAT6BQ8WYB5 2073 aa9.76□□□□□ -0.85
RTN4-212ENST00000461004 PRKAR2BP31323 418 aa9.75□□□□□ -0.85
RTN4-212ENST00000461004 PBX2P40425 430 aa9.75□□□□□ -0.85
RTN4-212ENST00000461004 PDE4DQ08499 809 aa9.75□□□□□ -0.85
RTN4-212ENST00000461004 EZH2Q15910 746 aaKnown RBP9.75□□□□□ -0.85
RTN4-212ENST00000461004 ZNF530Q6P9A1 599 aaPredicted RBP9.75□□□□□ -0.85
RTN4-212ENST00000461004 GPBP1L1Q9HC44 474 aaPredicted RBP9.75□□□□□ -0.85
RTN4-212ENST00000461004 NUDCQ9Y266 331 aa9.75□□□□□ -0.85
RTN4-212ENST00000461004 PCDH11XQ9BZA7 1347 aa9.75□□□□□ -0.85
RTN4-212ENST00000461004 PCDH11YQ9BZA8 1340 aa9.75□□□□□ -0.85
RTN4-212ENST00000461004 BCL9O00512 1426 aa9.74□□□□□ -0.85
RTN4-212ENST00000461004 ANP32CO43423 234 aa9.74□□□□□ -0.85
RTN4-212ENST00000461004 METTL3Q86U44 580 aaKnown RBP9.74□□□□□ -0.85
RTN4-212ENST00000461004 IFNL2Q8IZJ0 200 aa9.74□□□□□ -0.85
RTN4-212ENST00000461004 SYTL4Q96C24 671 aaPredicted RBP9.74□□□□□ -0.85
RTN4-212ENST00000461004 PKD1L3Q7Z443 1732 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 SBF2Q86WG5 1849 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 SF3B2Q13435 895 aaKnown RBP9.73□□□□□ -0.85
RTN4-212ENST00000461004 AMHR2Q16671 573 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 AMOTQ4VCS5 1084 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 MPRIPQ6WCQ1 1025 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 CCDC125Q86Z20 511 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 PXYLP1Q8TE99 480 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 CAMKK2Q96RR4 588 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 REPIN1Q9BWE0 567 aaKnown RBP9.73□□□□□ -0.85
RTN4-212ENST00000461004 LGR6Q9HBX8 967 aa9.73□□□□□ -0.85
RTN4-212ENST00000461004 SMAPO00193 183 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 KCNQ4P56696 695 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 NEUROD2Q15784 382 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 PIGBQ92521 554 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 PLEKHF1Q96S99 279 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 KIAA1468Q9P260 1216 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 ADAMTS8Q9UP79 889 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 VPS9D1Q9Y2B5 631 aa9.72□□□□□ -0.85
RTN4-212ENST00000461004 TNS1Q9HBL0 1735 aaKnown RBP9.72□□□□□ -0.85
RTN4-212ENST00000461004 KDM6AO15550 1401 aaPredicted RBP9.72□□□□□ -0.85
RTN4-212ENST00000461004 SENP3-EIF4A1A0A087X0R7 540 aa9.71□□□□□ -0.86
RTN4-212ENST00000461004 BAG6P46379 1132 aa9.71□□□□□ -0.86
RTN4-212ENST00000461004 NUDT18Q6ZVK8 323 aa9.71□□□□□ -0.86
RTN4-212ENST00000461004 PARP9Q8IXQ6 854 aa9.71□□□□□ -0.86
RTN4-212ENST00000461004 CCDC146Q8IYE0 955 aa9.71□□□□□ -0.86
RTN4-212ENST00000461004 SLC4A5Q9BY07 1137 aa9.71□□□□□ -0.86
RTN4-212ENST00000461004 DOT1LQ8TEK3 1739 aa9.7□□□□□ -0.86
RTN4-212ENST00000461004 TOGARAM1Q9Y4F4 1720 aa9.7□□□□□ -0.86
RTN4-212ENST00000461004 RNMTO43148 476 aaKnown RBP9.7□□□□□ -0.86
RTN4-212ENST00000461004 AKAP4Q5JQC9 854 aa9.7□□□□□ -0.86
RTN4-212ENST00000461004 C1orf141Q5JVX7 400 aa9.7□□□□□ -0.86
RTN4-212ENST00000461004 IL17REQ8NFR9 667 aa9.7□□□□□ -0.86
RTN4-212ENST00000461004 TATDN2Q93075 761 aa9.7□□□□□ -0.86
RTN4-212ENST00000461004 TMUB1Q9BVT8 246 aa9.7□□□□□ -0.86
RTN4-212ENST00000461004 OATP04181 439 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 LSM11P83369 360 aaKnown RBP eCLIP9.69□□□□□ -0.86
RTN4-212ENST00000461004 DCTN1Q14203 1278 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 NHSQ6T4R5 1651 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 DCAF5Q96JK2 942 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 KRTAP3-3Q9BYR6 98 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 KRTAP3-2Q9BYR7 98 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 PNMA3Q9UL41 463 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 ASAP1Q9ULH1 1129 aa9.69□□□□□ -0.86
RTN4-212ENST00000461004 BTAF1O14981 1849 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 PLSCR1O15162 318 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 MDM2Q00987 491 aaPredicted RBP9.68□□□□□ -0.86
RTN4-212ENST00000461004 WDR43Q15061 677 aaKnown RBP eCLIP9.68□□□□□ -0.86
RTN4-212ENST00000461004 TXNRD1Q16881 649 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 PACS2Q86VP3 889 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 NFATC2IPQ8NCF5 419 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 GAS2L2Q8NHY3 880 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 PNISRQ8TF01 805 aaKnown RBP9.68□□□□□ -0.86
RTN4-212ENST00000461004 KDM4CQ9H3R0 1056 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 MRS2Q9HD23 443 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 ATG3Q9NT62 314 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 LRRC4BQ9NT99 713 aa9.68□□□□□ -0.86
RTN4-212ENST00000461004 RRP7AQ9Y3A4 280 aaKnown RBP9.68□□□□□ -0.86
RTN4-212ENST00000461004 PLEKHG2Q9H7P9 1386 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 GNAT3A8MTJ3 354 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 ERVV-2B6SEH9 535 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 HSP90AB1P08238 724 aaKnown RBP9.67□□□□□ -0.86
RTN4-212ENST00000461004 CABP4P57796 275 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 DIEXFQ68CQ4 756 aaKnown RBP9.67□□□□□ -0.86
RTN4-212ENST00000461004 POTEGQ6S5H5 508 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 MCM10Q7L590 875 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 THUMPD2Q9BTF0 503 aaKnown RBP9.67□□□□□ -0.86
RTN4-212ENST00000461004 TMOD3Q9NYL9 352 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 SEPT9Q9UHD8 586 aaPredicted RBP9.67□□□□□ -0.86
RTN4-212ENST00000461004 RABGEF1Q9UJ41 708 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 ITGB4P16144 1822 aa9.67□□□□□ -0.86
RTN4-212ENST00000461004 MAP3K5Q99683 1374 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms