RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 KRT24Q2M2I5 525 aa19.76■□□□□ 0.75
LIMS3-201ENST00000437679 CNBD1Q8NA66 436 aa19.76■□□□□ 0.75
LIMS3-201ENST00000437679 MBIPQ9NS73 344 aa19.76■□□□□ 0.75
LIMS3-201ENST00000437679 NIP7Q9Y221 180 aaKnown RBP eCLIP19.76■□□□□ 0.75
LIMS3-201ENST00000437679 MAP3K15Q6ZN16 1313 aa19.76■□□□□ 0.75
LIMS3-201ENST00000437679 BRCA1P38398 1863 aaKnown RBP19.75■□□□□ 0.75
LIMS3-201ENST00000437679 HOXB7P09629 217 aa19.75■□□□□ 0.75
LIMS3-201ENST00000437679 DALRD3Q5D0E6 543 aaKnown RBP19.75■□□□□ 0.75
LIMS3-201ENST00000437679 PRR5LQ6MZQ0 368 aa19.75■□□□□ 0.75
LIMS3-201ENST00000437679 TTLL7Q6ZT98 887 aa19.75■□□□□ 0.75
LIMS3-201ENST00000437679 NECTIN2Q92692 538 aa19.75■□□□□ 0.75
LIMS3-201ENST00000437679 ST5P78524 1137 aa19.74■□□□□ 0.75
LIMS3-201ENST00000437679 HLFQ16534 295 aa19.74■□□□□ 0.75
LIMS3-201ENST00000437679 CCDC27Q2M243 656 aa19.74■□□□□ 0.75
LIMS3-201ENST00000437679 NBPF5PQ86XG9 351 aaPredicted RBP19.74■□□□□ 0.75
LIMS3-201ENST00000437679 BRIP1Q9BX63 1249 aa19.74■□□□□ 0.75
LIMS3-201ENST00000437679 SENP3-EIF4A1A0A087X0R7 540 aa19.73■□□□□ 0.75
LIMS3-201ENST00000437679 H0YIN7 160 aa19.73■□□□□ 0.75
LIMS3-201ENST00000437679 PDE6BP35913 854 aa19.73■□□□□ 0.75
LIMS3-201ENST00000437679 PDIA6Q15084 440 aa19.73■□□□□ 0.75
LIMS3-201ENST00000437679 C2CD5Q86YS7 1000 aa19.73■□□□□ 0.75
LIMS3-201ENST00000437679 PDZRN3Q9UPQ7 1066 aa19.73■□□□□ 0.75
LIMS3-201ENST00000437679 ANXA1P04083 346 aa19.72■□□□□ 0.75
LIMS3-201ENST00000437679 NCBP3Q53F19 620 aaKnown RBP19.72■□□□□ 0.75
LIMS3-201ENST00000437679 HDGFL1Q5TGJ6 251 aa19.72■□□□□ 0.75
LIMS3-201ENST00000437679 DUSP27Q5VZP5 1158 aa19.72■□□□□ 0.75
LIMS3-201ENST00000437679 FAM9BQ8IZU0 186 aa19.72■□□□□ 0.75
LIMS3-201ENST00000437679 CCDC24Q8N4L8 307 aa19.72■□□□□ 0.75
LIMS3-201ENST00000437679 ZBTB3Q9H5J0 574 aa19.72■□□□□ 0.75
LIMS3-201ENST00000437679 DDX21Q9NR30 783 aaKnown RBP eCLIP19.72■□□□□ 0.75
LIMS3-201ENST00000437679 NUP98P52948 1817 aa19.72■□□□□ 0.75
LIMS3-201ENST00000437679 PROSER3Q2NL68 480 aa19.71■□□□□ 0.75
LIMS3-201ENST00000437679 TPTE2Q6XPS3 522 aa19.71■□□□□ 0.75
LIMS3-201ENST00000437679 WWC1Q8IX03 1113 aa19.71■□□□□ 0.75
LIMS3-201ENST00000437679 ARFGEF1Q9Y6D6 1849 aa19.7■□□□□ 0.74
LIMS3-201ENST00000437679 FAM177BA6PVY3 158 aa19.7■□□□□ 0.74
LIMS3-201ENST00000437679 ARHGAP27Q6ZUM4 889 aa19.7■□□□□ 0.74
LIMS3-201ENST00000437679 LRP10Q7Z4F1 713 aa19.7■□□□□ 0.74
LIMS3-201ENST00000437679 ANKRD31Q8N7Z5 1873 aa19.7■□□□□ 0.74
LIMS3-201ENST00000437679 ATP10DQ9P241 1426 aa19.69■□□□□ 0.74
LIMS3-201ENST00000437679 GTF2E1P29083 439 aaPredicted RBP19.69■□□□□ 0.74
LIMS3-201ENST00000437679 ZNF784Q8NCA9 323 aaPredicted RBP19.69■□□□□ 0.74
LIMS3-201ENST00000437679 CHPF2Q9P2E5 772 aa19.69■□□□□ 0.74
LIMS3-201ENST00000437679 DLEC1Q9Y238 1755 aa19.69■□□□□ 0.74
LIMS3-201ENST00000437679 AIMP1Q12904 312 aaKnown RBP19.68■□□□□ 0.74
LIMS3-201ENST00000437679 GIGYF2Q6Y7W6 1299 aaKnown RBP19.68■□□□□ 0.74
LIMS3-201ENST00000437679 COPS6Q7L5N1 327 aa19.68■□□□□ 0.74
LIMS3-201ENST00000437679 TTLL6Q8N841 843 aa19.68■□□□□ 0.74
LIMS3-201ENST00000437679 XAGE3Q8WTP9 111 aa19.68■□□□□ 0.74
LIMS3-201ENST00000437679 ZNF622Q969S3 477 aaKnown RBP eCLIP19.68■□□□□ 0.74
LIMS3-201ENST00000437679 NYXQ9GZU5 481 aa19.68■□□□□ 0.74
LIMS3-201ENST00000437679 DBF4Q9UBU7 674 aaPredicted RBP19.68■□□□□ 0.74
LIMS3-201ENST00000437679 SALL2Q9Y467 1007 aaPredicted RBP19.68■□□□□ 0.74
LIMS3-201ENST00000437679 ELL2O00472 640 aaPredicted RBP19.67■□□□□ 0.74
LIMS3-201ENST00000437679 GPTP24298 496 aa19.67■□□□□ 0.74
LIMS3-201ENST00000437679 CHMP4AQ9BY43 222 aa19.67■□□□□ 0.74
LIMS3-201ENST00000437679 IL16Q14005 1332 aa19.67■□□□□ 0.74
LIMS3-201ENST00000437679 HSP90AB3PQ58FF7 597 aa19.65■□□□□ 0.74
LIMS3-201ENST00000437679 ZNF34Q8IZ26 560 aa19.65■□□□□ 0.74
LIMS3-201ENST00000437679 C8orf58Q8NAV2 365 aa19.65■□□□□ 0.74
LIMS3-201ENST00000437679 HYPKQ9NX55 129 aa19.65■□□□□ 0.74
LIMS3-201ENST00000437679 PARP10Q53GL7 1025 aa19.64■□□□□ 0.73
LIMS3-201ENST00000437679 WDR63Q8IWG1 891 aa19.64■□□□□ 0.73
LIMS3-201ENST00000437679 TSR2Q969E8 191 aaKnown RBP19.64■□□□□ 0.73
LIMS3-201ENST00000437679 MASTLQ96GX5 879 aa19.64■□□□□ 0.73
LIMS3-201ENST00000437679 COL11A2P13942 1736 aaPredicted RBP19.63■□□□□ 0.73
LIMS3-201ENST00000437679 IBTKQ9P2D0 1353 aaPredicted RBP19.63■□□□□ 0.73
LIMS3-201ENST00000437679 UBN2Q6ZU65 1347 aa19.63■□□□□ 0.73
LIMS3-201ENST00000437679 SRGNP10124 158 aa19.63■□□□□ 0.73
LIMS3-201ENST00000437679 STYK1Q6J9G0 422 aa19.63■□□□□ 0.73
LIMS3-201ENST00000437679 PPP1R42Q7Z4L9 355 aa19.63■□□□□ 0.73
LIMS3-201ENST00000437679 CNKSR1Q969H4 720 aa19.63■□□□□ 0.73
LIMS3-201ENST00000437679 SUSD4Q5VX71 490 aa19.62■□□□□ 0.73
LIMS3-201ENST00000437679 NUTM1Q86Y26 1132 aa19.62■□□□□ 0.73
LIMS3-201ENST00000437679 NPR1P16066 1061 aa19.61■□□□□ 0.73
LIMS3-201ENST00000437679 ERFEQ4G0M1 354 aa19.61■□□□□ 0.73
LIMS3-201ENST00000437679 CCDC30Q5VVM6 783 aa19.61■□□□□ 0.73
LIMS3-201ENST00000437679 ANKRD13DQ6ZTN6 518 aa19.61■□□□□ 0.73
LIMS3-201ENST00000437679 PLBD2Q8NHP8 589 aa19.61■□□□□ 0.73
LIMS3-201ENST00000437679 KLRG2A4D1S0 409 aaPredicted RBP19.6■□□□□ 0.73
LIMS3-201ENST00000437679 TCIRG1Q13488 830 aa19.6■□□□□ 0.73
LIMS3-201ENST00000437679 TSPYL6Q8N831 410 aa19.6■□□□□ 0.73
LIMS3-201ENST00000437679 UTP14AQ9BVJ6 771 aaKnown RBP19.6■□□□□ 0.73
LIMS3-201ENST00000437679 ANKRD36CQ5JPF3 1778 aa19.6■□□□□ 0.73
LIMS3-201ENST00000437679 ADCY9O60503 1353 aa19.59■□□□□ 0.73
LIMS3-201ENST00000437679 NTSR2O95665 410 aa19.59■□□□□ 0.73
LIMS3-201ENST00000437679 ABCC12Q96J65 1359 aa19.58■□□□□ 0.73
LIMS3-201ENST00000437679 CCER2I3L3R5 266 aa19.58■□□□□ 0.72
LIMS3-201ENST00000437679 GOLGA2Q08379 1002 aa19.58■□□□□ 0.72
LIMS3-201ENST00000437679 TWISTNBQ3B726 338 aaPredicted RBP19.58■□□□□ 0.72
LIMS3-201ENST00000437679 PRPF40BQ6NWY9 871 aaKnown RBP19.58■□□□□ 0.72
LIMS3-201ENST00000437679 ZNF219Q9P2Y4 722 aaPredicted RBP19.58■□□□□ 0.72
LIMS3-201ENST00000437679 CACNA1SQ13698 1873 aa19.58■□□□□ 0.72
LIMS3-201ENST00000437679 FANCIQ9NVI1 1328 aa19.57■□□□□ 0.72
LIMS3-201ENST00000437679 C21orf2O43822 256 aa19.57■□□□□ 0.72
LIMS3-201ENST00000437679 C9orf131Q5VYM1 1079 aa19.57■□□□□ 0.72
LIMS3-201ENST00000437679 RIC3Q7Z5B4 369 aa19.57■□□□□ 0.72
LIMS3-201ENST00000437679 NLRP10Q86W26 655 aa19.57■□□□□ 0.72
LIMS3-201ENST00000437679 STK31Q9BXU1 1019 aa19.57■□□□□ 0.72
LIMS3-201ENST00000437679 RNF123Q5XPI4 1314 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms