RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 NUP98P52948 1817 aa24.14■■□□□ 1.46
SHH-203ENST00000435425 TSPYL6Q8N831 410 aa24.14■■□□□ 1.45
SHH-203ENST00000435425 SETDB2Q96T68 719 aa24.14■■□□□ 1.45
SHH-203ENST00000435425 ZBTB3Q9H5J0 574 aa24.14■■□□□ 1.45
SHH-203ENST00000435425 DDX21Q9NR30 783 aaKnown RBP eCLIP24.14■■□□□ 1.45
SHH-203ENST00000435425 WWC3Q9ULE0 1092 aa24.14■■□□□ 1.45
SHH-203ENST00000435425 KIF13BQ9NQT8 1826 aa24.14■■□□□ 1.45
SHH-203ENST00000435425 N4BP2Q86UW6 1770 aaPredicted RBP24.14■■□□□ 1.45
SHH-203ENST00000435425 SPINK5Q9NQ38 1064 aaPredicted RBP24.13■■□□□ 1.45
SHH-203ENST00000435425 MAP3K15Q6ZN16 1313 aa24.12■■□□□ 1.45
SHH-203ENST00000435425 FANCIQ9NVI1 1328 aa24.12■■□□□ 1.45
SHH-203ENST00000435425 C10orf71Q711Q0 1435 aa24.12■■□□□ 1.45
SHH-203ENST00000435425 CLEC4GQ6UXB4 293 aa24.12■■□□□ 1.45
SHH-203ENST00000435425 COPS6Q7L5N1 327 aa24.12■■□□□ 1.45
SHH-203ENST00000435425 LRP10Q7Z4F1 713 aa24.12■■□□□ 1.45
SHH-203ENST00000435425 XAGE3Q8WTP9 111 aa24.12■■□□□ 1.45
SHH-203ENST00000435425 DBF4Q9UBU7 674 aaPredicted RBP24.11■■□□□ 1.45
SHH-203ENST00000435425 NRXN2Q9P2S2 1712 aa24.1■■□□□ 1.45
SHH-203ENST00000435425 FAM177BA6PVY3 158 aa24.1■■□□□ 1.45
SHH-203ENST00000435425 NPHP1O15259 732 aa24.1■■□□□ 1.45
SHH-203ENST00000435425 GOLGA2Q08379 1002 aa24.1■■□□□ 1.45
SHH-203ENST00000435425 GPR162Q16538 588 aa24.1■■□□□ 1.45
SHH-203ENST00000435425 CCDC24Q8N4L8 307 aa24.1■■□□□ 1.45
SHH-203ENST00000435425 NIP7Q9Y221 180 aaKnown RBP eCLIP24.1■■□□□ 1.45
SHH-203ENST00000435425 CARMIL3Q8ND23 1372 aa24.1■■□□□ 1.45
SHH-203ENST00000435425 A0A0G2JLW4 131 aa24.09■■□□□ 1.45
SHH-203ENST00000435425 ERVV-1B6SEH8 477 aa24.09■■□□□ 1.45
SHH-203ENST00000435425 TCERG1O14776 1098 aaKnown RBP24.09■■□□□ 1.45
SHH-203ENST00000435425 TWISTNBQ3B726 338 aaPredicted RBP24.09■■□□□ 1.45
SHH-203ENST00000435425 KIAA1551Q9HCM1 1747 aa24.08■■□□□ 1.45
SHH-203ENST00000435425 EXOSC9Q06265 439 aaKnown RBP24.08■■□□□ 1.45
SHH-203ENST00000435425 MYH16Q9H6N6 1097 aa24.08■■□□□ 1.45
SHH-203ENST00000435425 ZNF521Q96K83 1311 aa24.08■■□□□ 1.44
SHH-203ENST00000435425 TGFB2P61812 414 aa24.07■■□□□ 1.44
SHH-203ENST00000435425 CCDC30Q5VVM6 783 aa24.07■■□□□ 1.44
SHH-203ENST00000435425 HYPKQ9NX55 129 aa24.07■■□□□ 1.44
SHH-203ENST00000435425 PXDNLA1KZ92 1463 aa24.07■■□□□ 1.44
SHH-203ENST00000435425 DPEP1P16444 411 aa24.06■■□□□ 1.44
SHH-203ENST00000435425 GPTP24298 496 aa24.06■■□□□ 1.44
SHH-203ENST00000435425 NBPF5PQ86XG9 351 aaPredicted RBP24.06■■□□□ 1.44
SHH-203ENST00000435425 RGL2O15211 777 aa24.05■■□□□ 1.44
SHH-203ENST00000435425 PRR5LQ6MZQ0 368 aa24.05■■□□□ 1.44
SHH-203ENST00000435425 GIGYF2Q6Y7W6 1299 aaKnown RBP24.05■■□□□ 1.44
SHH-203ENST00000435425 CNBD1Q8NA66 436 aa24.05■■□□□ 1.44
SHH-203ENST00000435425 CHRNA5P30532 468 aa24.04■■□□□ 1.44
SHH-203ENST00000435425 CHMP4AQ9BY43 222 aa24.04■■□□□ 1.44
SHH-203ENST00000435425 PHAXQ9H814 394 aaKnown RBP24.04■■□□□ 1.44
SHH-203ENST00000435425 ANKRD31Q8N7Z5 1873 aa24.02■■□□□ 1.44
SHH-203ENST00000435425 YBX3P16989 372 aaKnown RBP eCLIP24.02■■□□□ 1.44
SHH-203ENST00000435425 ST5P78524 1137 aa24.02■■□□□ 1.44
SHH-203ENST00000435425 STK31Q9BXU1 1019 aa24.02■■□□□ 1.44
SHH-203ENST00000435425 ANKRD36CQ5JPF3 1778 aa24.01■■□□□ 1.43
SHH-203ENST00000435425 GTF2E1P29083 439 aaPredicted RBP24.01■■□□□ 1.43
SHH-203ENST00000435425 TPTE2Q6XPS3 522 aa24.01■■□□□ 1.43
SHH-203ENST00000435425 ANKRD13DQ6ZTN6 518 aa24.01■■□□□ 1.43
SHH-203ENST00000435425 ATP10DQ9P241 1426 aa24.01■■□□□ 1.43
SHH-203ENST00000435425 VAMP4O75379 141 aa24■■□□□ 1.43
SHH-203ENST00000435425 ZNF34Q8IZ26 560 aa24■■□□□ 1.43
SHH-203ENST00000435425 PLBD2Q8NHP8 589 aa24■■□□□ 1.43
SHH-203ENST00000435425 CDCA7LQ96GN5 454 aa24■■□□□ 1.43
SHH-203ENST00000435425 UBN2Q6ZU65 1347 aa24■■□□□ 1.43
SHH-203ENST00000435425 KCNA3P22001 575 aa23.99■■□□□ 1.43
SHH-203ENST00000435425 RIC3Q7Z5B4 369 aa23.99■■□□□ 1.43
SHH-203ENST00000435425 C2CD5Q86YS7 1000 aa23.99■■□□□ 1.43
SHH-203ENST00000435425 ZNF428Q96B54 188 aa23.99■■□□□ 1.43
SHH-203ENST00000435425 BCS1LQ9Y276 419 aa23.99■■□□□ 1.43
SHH-203ENST00000435425 ARFGEF2Q9Y6D5 1785 aa23.98■■□□□ 1.43
SHH-203ENST00000435425 BRCA1P38398 1863 aaKnown RBP23.98■■□□□ 1.43
SHH-203ENST00000435425 E9PSI1 815 aa23.98■■□□□ 1.43
SHH-203ENST00000435425 HSP90AB3PQ58FF7 597 aa23.98■■□□□ 1.43
SHH-203ENST00000435425 SUSD4Q5VX71 490 aa23.98■■□□□ 1.43
SHH-203ENST00000435425 BRIP1Q9BX63 1249 aa23.98■■□□□ 1.43
SHH-203ENST00000435425 H0YIN7 160 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 SLC4A2P04920 1241 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 PDE6BP35913 854 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 SLFN5Q08AF3 891 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 TCIRG1Q13488 830 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 NUTM1Q86Y26 1132 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 NYXQ9GZU5 481 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 PIM2Q9P1W9 311 aa23.97■■□□□ 1.43
SHH-203ENST00000435425 HNRNPUQ00839 825 aaKnown RBP eCLIP23.96■■□□□ 1.43
SHH-203ENST00000435425 ERFEQ4G0M1 354 aa23.95■■□□□ 1.42
SHH-203ENST00000435425 G2E3Q7L622 706 aa23.95■■□□□ 1.42
SHH-203ENST00000435425 PPP1R42Q7Z4L9 355 aa23.95■■□□□ 1.42
SHH-203ENST00000435425 DLEC1Q9Y238 1755 aa23.94■■□□□ 1.42
SHH-203ENST00000435425 ATP5J2-PTCD1G3V325 749 aa23.94■■□□□ 1.42
SHH-203ENST00000435425 GRIN3BO60391 1043 aa23.94■■□□□ 1.42
SHH-203ENST00000435425 DDX58O95786 925 aaKnown RBP23.94■■□□□ 1.42
SHH-203ENST00000435425 PARP10Q53GL7 1025 aa23.94■■□□□ 1.42
SHH-203ENST00000435425 ZNF622Q969S3 477 aaKnown RBP eCLIP23.94■■□□□ 1.42
SHH-203ENST00000435425 CACNA1FO60840 1977 aa23.94■■□□□ 1.42
SHH-203ENST00000435425 COL11A2P13942 1736 aaPredicted RBP23.93■■□□□ 1.42
SHH-203ENST00000435425 DALRD3Q5D0E6 543 aaKnown RBP23.93■■□□□ 1.42
SHH-203ENST00000435425 UTP14AQ9BVJ6 771 aaKnown RBP23.93■■□□□ 1.42
SHH-203ENST00000435425 CACNA1SQ13698 1873 aa23.93■■□□□ 1.42
SHH-203ENST00000435425 NTSR2O95665 410 aa23.92■■□□□ 1.42
SHH-203ENST00000435425 NLRP10Q86W26 655 aa23.92■■□□□ 1.42
SHH-203ENST00000435425 MYD88Q99836 296 aa23.92■■□□□ 1.42
SHH-203ENST00000435425 ABCC12Q96J65 1359 aa23.91■■□□□ 1.42
SHH-203ENST00000435425 CHD4Q14839 1912 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms