RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 NUTM2GQ5VZR2 741 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 ABTB2Q8N961 1025 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 HAUS7Q99871 368 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 SAMM50Q9Y512 469 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 FAM169AQ9Y6X4 670 aa12.21□□□□□ -0.45
RTN3-206ENST00000377819 U3KPZ7 1027 aaPredicted RBP12.21□□□□□ -0.45
RTN3-206ENST00000377819 NCBP1Q09161 790 aaKnown RBP12.21□□□□□ -0.46
RTN3-206ENST00000377819 TRAF1Q13077 416 aa12.21□□□□□ -0.46
RTN3-206ENST00000377819 TRMT1LQ7Z2T5 733 aaKnown RBP12.21□□□□□ -0.46
RTN3-206ENST00000377819 CCT6BQ92526 530 aa12.21□□□□□ -0.46
RTN3-206ENST00000377819 IFT140Q96RY7 1462 aa12.21□□□□□ -0.46
RTN3-206ENST00000377819 CCDC12Q8WUD4 166 aaPredicted RBP12.2□□□□□ -0.46
RTN3-206ENST00000377819 CALML4Q96GE6 196 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 IMPG2Q9BZV3 1241 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 CACYBPQ9HB71 228 aaKnown RBP12.2□□□□□ -0.46
RTN3-206ENST00000377819 SPAG5Q96R06 1193 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 TCHPQ9BT92 498 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 PDRG1Q9NUG6 133 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 AKR1B10O60218 316 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 PHACTR2O75167 634 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 CGNQ9P2M7 1197 aaKnown RBP12.2□□□□□ -0.46
RTN3-206ENST00000377819 PRKCSHP14314 528 aaPredicted RBP12.2□□□□□ -0.46
RTN3-206ENST00000377819 PRPHP41219 470 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 CCT4P50991 539 aaKnown RBP12.2□□□□□ -0.46
RTN3-206ENST00000377819 LRRC27Q9C0I9 530 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 CABP5Q9NP86 173 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 ZNF652Q9Y2D9 606 aa12.2□□□□□ -0.46
RTN3-206ENST00000377819 NUTM2BA6NNL0 878 aaPredicted RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 MINDY4BA8MYZ0 360 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 NUTM2EB1AL46 878 aaPredicted RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 MYO1BO43795 1136 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 NUTM2AQ8IVF1 878 aaPredicted RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 PPFIBP2Q8ND30 876 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 BICD1Q96G01 975 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 STMN4Q9H169 189 aaPredicted RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 ADCY10Q96PN6 1610 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 PROSER2Q86WR7 435 aaPredicted RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 PAIP2Q9BPZ3 127 aaKnown RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 FANCIQ9NVI1 1328 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 GOLIM4O00461 696 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 TACC1O75410 805 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 GBP7Q8N8V2 638 aaPredicted RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 JAKMIP1Q96N16 626 aaKnown RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 RRBP1Q9P2E9 1410 aaKnown RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 WDR46O15213 610 aaKnown RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 PLCB3Q01970 1234 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 EHBP1Q8NDI1 1231 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 SCAND2PQ9GZW5 306 aaPredicted RBP12.19□□□□□ -0.46
RTN3-206ENST00000377819 SPG7Q9UQ90 795 aa12.19□□□□□ -0.46
RTN3-206ENST00000377819 UBA7P41226 1012 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 NAPBQ9H115 298 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 AKAP2Q9Y2D5 859 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 ATP2C2O75185 946 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 CCDC144AA2RUR9 1427 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 GIPC1O14908 333 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 STMN1P16949 149 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 ERCC6LQ2NKX8 1250 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 BICDL1Q6ZP65 573 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 WDR63Q8IWG1 891 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 B4DLN1 442 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 MRPL12P52815 198 aaKnown RBP12.18□□□□□ -0.46
RTN3-206ENST00000377819 CFAP157Q5JU67 520 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 CKAP2LQ8IYA6 745 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 CPLX3Q8WVH0 158 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 TBC1D5Q92609 795 aa12.18□□□□□ -0.46
RTN3-206ENST00000377819 PYM1Q9BRP8 204 aaKnown RBP12.18□□□□□ -0.46
RTN3-206ENST00000377819 ZBED9Q6R2W3 1325 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 ESPNB1AK53 854 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 RRP9O43818 475 aaKnown RBP12.17□□□□□ -0.46
RTN3-206ENST00000377819 AACSQ86V21 672 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 RNF41Q9H4P4 317 aaPredicted RBP12.17□□□□□ -0.46
RTN3-206ENST00000377819 CEP170Q5SW79 1584 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 CASQ2O14958 399 aaPredicted RBP12.17□□□□□ -0.46
RTN3-206ENST00000377819 NLRP5P59047 1200 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 PANK1Q8TE04 598 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 SEPT8Q92599 483 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.17□□□□□ -0.463e-6■■■□□ 16.3
RTN3-206ENST00000377819 FMN1Q68DA7 1419 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 A0A087WZG4 1122 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 GTF2F1P35269 517 aaKnown RBP eCLIP12.17□□□□□ -0.463e-7■■■■■ 29.2
RTN3-206ENST00000377819 SETDB1Q15047 1291 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 CEP120Q8N960 986 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 VPS8Q8N3P4 1428 aa12.17□□□□□ -0.46
RTN3-206ENST00000377819 NEMFO60524 1076 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 PPFIA2O75334 1257 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 TBCAO75347 108 aaKnown RBP12.16□□□□□ -0.46
RTN3-206ENST00000377819 ATP2A2P16615 1042 aaKnown RBP12.16□□□□□ -0.46
RTN3-206ENST00000377819 ANKS4BQ8N8V4 417 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 MSANTD4Q8NCY6 345 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 EPSTI1Q96J88 318 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 JADE2Q9NQC1 790 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 PRDM11Q9NQV5 511 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 RASAL2Q9UJF2 1139 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 HSF2BPO75031 334 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 LDHCP07864 332 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 CUL4BQ13620 913 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 TWISTNBQ3B726 338 aaPredicted RBP12.16□□□□□ -0.46
RTN3-206ENST00000377819 RSPH3Q86UC2 560 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 ATRIPQ8WXE1 791 aa12.16□□□□□ -0.46
RTN3-206ENST00000377819 MIA2Q96PC5 1412 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms