RNA–Protein interactions for RNA: ENST00000358511.10

COL6A6-201, Transcript of collagen type VI alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL6A6, Length 9,581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6-201ENST00000358511 TMX1Q9H3N1 280 aa10.1□□□□□ -0.79
COL6A6-201ENST00000358511 ZSWIM4Q9H7M6 989 aa10.1□□□□□ -0.79
COL6A6-201ENST00000358511 CACNA2D4Q7Z3S7 1137 aa10.1□□□□□ -0.79
COL6A6-201ENST00000358511 SCLT1Q96NL6 688 aa10.1□□□□□ -0.79
COL6A6-201ENST00000358511 HYPKQ9NX55 129 aa10.1□□□□□ -0.79
COL6A6-201ENST00000358511 SETD1BQ9UPS6 1966 aaKnown RBP10.1□□□□□ -0.79
COL6A6-201ENST00000358511 TTC22Q5TAA0 569 aa10.1□□□□□ -0.79
COL6A6-201ENST00000358511 USP48Q86UV5 1035 aa10.1□□□□□ -0.79
COL6A6-201ENST00000358511 CCDC186Q7Z3E2 898 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 UBASH3AP57075 661 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 SIL1Q9H173 461 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 GSTTP1A0A1W2PQM5 241 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 POTEDQ86YR6 584 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 ERO1AQ96HE7 468 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 CTAGE1Q96RT6 745 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 SYT1P21579 422 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 NESP48681 1621 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 PIBF1Q8WXW3 757 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 CNPY2Q9Y2B0 182 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 STAMBPO95630 424 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 ANAPC15P60006 121 aa10.09□□□□□ -0.79
COL6A6-201ENST00000358511 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.09□□□□□ -0.79
COL6A6-201ENST00000358511 TYRO3Q06418 890 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 FAM76AQ8TAV0 307 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 VGLL3A8MV65 326 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 IGHDP01880 384 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 KANK3Q6NY19 840 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 UBAC1Q9BSL1 405 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 IGSF3O75054 1194 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 CETN2P41208 172 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 MAP3K9P80192 1104 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 NAA25Q14CX7 972 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 WDR66Q8TBY9 1149 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 NUP133Q8WUM0 1156 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 TMX3Q96JJ7 454 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 AQRO60306 1485 aaKnown RBP eCLIP10.08□□□□□ -0.8
COL6A6-201ENST00000358511 STMN4Q9H169 189 aaPredicted RBP10.08□□□□□ -0.8
COL6A6-201ENST00000358511 A6NNZ2 444 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 TUBB8Q3ZCM7 444 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 PEG3Q9GZU2 1588 aa10.08□□□□□ -0.8
COL6A6-201ENST00000358511 ZMYM4Q5VZL5 1548 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 CCDC196A0A1B0GTZ2 297 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 UBE4AQ14139 1066 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 CCDC50Q8IVM0 306 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 THOC2Q8NI27 1593 aaKnown RBP10.07□□□□□ -0.8
COL6A6-201ENST00000358511 BIN1O00499 593 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 NFE2L2Q16236 605 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 FAM114A1Q8IWE2 563 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 IL1RAPL2Q9NP60 686 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 DMTNQ08495 405 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 CCDC114Q96M63 670 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 PTPRCP08575 1304 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 ATRIPQ8WXE1 791 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 TSG101Q99816 390 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 PYM1Q9BRP8 204 aaKnown RBP10.07□□□□□ -0.8
COL6A6-201ENST00000358511 MKRN1Q9UHC7 482 aaKnown RBP10.07□□□□□ -0.8
COL6A6-201ENST00000358511 PTPRGP23470 1445 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 GOLIM4O00461 696 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 PTGS1P23219 599 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 JPH4Q96JJ6 628 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 HMG20BQ9P0W2 317 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 CEP83Q9Y592 693 aa10.07□□□□□ -0.8
COL6A6-201ENST00000358511 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.07□□□□□ -0.8
COL6A6-201ENST00000358511 MYCBPQ99417 103 aaPredicted RBP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 GNL3LQ9NVN8 582 aaKnown RBP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 CLGNO14967 610 aa10.06□□□□□ -0.8
COL6A6-201ENST00000358511 U2AF2P26368 475 aaKnown RBP eCLIP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 ZHX3Q9H4I2 956 aa10.06□□□□□ -0.8
COL6A6-201ENST00000358511 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 RBM28Q9NW13 759 aaKnown RBP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 SMARCA5O60264 1052 aaPredicted RBP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 SYNJ2O15056 1496 aa10.06□□□□□ -0.8
COL6A6-201ENST00000358511 FKBP4Q02790 459 aaKnown RBP eCLIP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 VIRMAQ69YN4 1812 aaKnown RBP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 TRIM21P19474 475 aaKnown RBP10.06□□□□□ -0.8
COL6A6-201ENST00000358511 KIF5BP33176 963 aa10.06□□□□□ -0.8
COL6A6-201ENST00000358511 CCDC6Q16204 474 aa10.06□□□□□ -0.8
COL6A6-201ENST00000358511 ADGBQ8N7X0 1667 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 NUTM1Q86Y26 1132 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 FAM177BA6PVY3 158 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 KIF4AO95239 1232 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 DDX12PQ92771 950 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 DESP17661 470 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 DNA2P51530 1060 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 KCNG4Q8TDN1 519 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 TTC14Q96N46 770 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 SLC12A5Q9H2X9 1139 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 RIOK3O14730 519 aaKnown RBP10.05□□□□□ -0.8
COL6A6-201ENST00000358511 SEPT6Q14141 434 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 AFAP1L1Q8TED9 768 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 MTMR7Q9Y216 660 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 IFI16Q16666 785 aaKnown RBP10.05□□□□□ -0.8
COL6A6-201ENST00000358511 CCDC155Q8N6L0 562 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 RAPGEF4Q8WZA2 1011 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 CCDC96Q2M329 555 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 ZNF445P59923 1031 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 DNAJC21Q5F1R6 531 aaKnown RBP10.05□□□□□ -0.8
COL6A6-201ENST00000358511 KIF6Q6ZMV9 814 aa10.05□□□□□ -0.8
COL6A6-201ENST00000358511 CPLX3Q8WVH0 158 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms