RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PCK1P35558 622 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 KANK4Q5T7N3 995 aaPredicted RBP14.46□□□□□ -0.09
COL6A3-203ENST00000353578 FERMT1Q9BQL6 677 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 TRERF1Q96PN7 1200 aa14.46□□□□□ -0.09
COL6A3-203ENST00000353578 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.46□□□□□ -0.09
COL6A3-203ENST00000353578 NBPF7P0C2Y1 421 aaPredicted RBP14.46□□□□□ -0.1
COL6A3-203ENST00000353578 GCKP35557 465 aa14.46□□□□□ -0.1
COL6A3-203ENST00000353578 ANAPC15P60006 121 aa14.46□□□□□ -0.1
COL6A3-203ENST00000353578 DAPK1P53355 1430 aa14.46□□□□□ -0.1
COL6A3-203ENST00000353578 KRT83P78385 493 aa14.46□□□□□ -0.1
COL6A3-203ENST00000353578 WIZO95785 1651 aa14.46□□□□□ -0.1
COL6A3-203ENST00000353578 ATP2A1O14983 1001 aa14.46□□□□□ -0.1
COL6A3-203ENST00000353578 BMP15O95972 392 aa14.46□□□□□ -0.1
COL6A3-203ENST00000353578 LRRC9Q6ZRR7 1453 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 ATP8B1O43520 1251 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 ATL3Q6DD88 541 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 PIBF1Q8WXW3 757 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 KRT86O43790 486 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 CYLC1P35663 651 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-203ENST00000353578 EFCAB13Q8IY85 973 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 SEC62Q99442 399 aaKnown RBP14.45□□□□□ -0.1
COL6A3-203ENST00000353578 VCX3AQ9NNX9 186 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 TEFQ10587 303 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 ATRIPQ8WXE1 791 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 RAB3IPQ96QF0 476 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-203ENST00000353578 NEBLO76041 1014 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 MCM6Q14566 821 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 RAB34Q9BZG1 259 aa14.45□□□□□ -0.1
COL6A3-203ENST00000353578 AMPHP49418 695 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 VPS18Q9P253 973 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 LIMCH1Q9UPQ0 1083 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 U3KPZ7 1027 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-203ENST00000353578 TRPC3Q13507 836 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 CFAP58Q5T655 872 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 PNISRQ8TF01 805 aaKnown RBP14.44□□□□□ -0.1
COL6A3-203ENST00000353578 RPAP2Q8IXW5 612 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-203ENST00000353578 JADE2Q9NQC1 790 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 RMND1Q9NWS8 449 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 RAB11FIP3O75154 756 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 ARID4AP29374 1257 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-203ENST00000353578 CETN1Q12798 172 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 LMBR1Q8WVP7 490 aa14.44□□□□□ -0.1
COL6A3-203ENST00000353578 CWC25Q9NXE8 425 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-203ENST00000353578 CCDC178Q5BJE1 867 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 IQCGQ9H095 443 aaKnown RBP14.43□□□□□ -0.1
COL6A3-203ENST00000353578 FAN1Q9Y2M0 1017 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 ARMC9Q7Z3E5 817 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.43□□□□□ -0.1
COL6A3-203ENST00000353578 ANKRD30BQ9BXX2 1392 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 RRP7AQ9Y3A4 280 aaKnown RBP14.43□□□□□ -0.1
COL6A3-203ENST00000353578 ERCC6LQ2NKX8 1250 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 VEZTQ9HBM0 779 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 GBP5Q96PP8 586 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 TRIM4Q9C037 500 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 TANGO6Q9C0B7 1094 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 HDAC9Q9UKV0 1011 aa14.43□□□□□ -0.1
COL6A3-203ENST00000353578 HECW1Q76N89 1606 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 CNGA1P29973 690 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 KIAA0753Q2KHM9 967 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 WWC2Q6AWC2 1192 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 TTC5Q8N0Z6 440 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 Q9H521 79 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 PPFIA4O75335 1185 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 TMC6Q7Z403 805 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 GOPCQ9HD26 462 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 RUFY4Q6ZNE9 571 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 LRRC27Q9C0I9 530 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 MACROD2A1Z1Q3 448 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 SRGAP3O43295 1099 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 ALDH1L2Q3SY69 923 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 IMPACTQ9P2X3 320 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 HMG20BQ9P0W2 317 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 MTUS1Q9ULD2 1270 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 A0A1W2PRG0 241 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 VPS37DQ86XT2 251 aa14.42□□□□□ -0.1
COL6A3-203ENST00000353578 ZNF500O60304 480 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-203ENST00000353578 UBE4AQ14139 1066 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 LMOD2Q6P5Q4 547 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 DTNBP1Q96EV8 351 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 TSNARE1Q96NA8 513 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 NEDD9Q14511 834 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 NDUFAB1O14561 156 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 BRD3Q15059 726 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 ZWINTO95229 277 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 RPUSD2Q8IZ73 545 aaKnown RBP14.41□□□□□ -0.1
COL6A3-203ENST00000353578 SATB2Q9UPW6 733 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 CTDP1Q9Y5B0 961 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-203ENST00000353578 PLCD3Q8N3E9 789 aa14.41□□□□□ -0.1
COL6A3-203ENST00000353578 AKAP2Q9Y2D5 859 aa14.4□□□□□ -0.1
COL6A3-203ENST00000353578 DDX27Q96GQ7 796 aaKnown RBP14.4□□□□□ -0.1
COL6A3-203ENST00000353578 STX6O43752 255 aa14.4□□□□□ -0.1
COL6A3-203ENST00000353578 IQCDQ96DY2 449 aa14.4□□□□□ -0.1
COL6A3-203ENST00000353578 RNF10Q8N5U6 811 aaKnown RBP14.4□□□□□ -0.1
COL6A3-203ENST00000353578 MPHOSPH8Q99549 860 aa14.4□□□□□ -0.1
COL6A3-203ENST00000353578 PLCB1Q9NQ66 1216 aa14.4□□□□□ -0.1
COL6A3-203ENST00000353578 DRC1Q96MC2 740 aa14.4□□□□□ -0.1
COL6A3-203ENST00000353578 ZSCAN26Q16670 478 aa14.4□□□□□ -0.1
COL6A3-203ENST00000353578 TSPYL2Q9H2G4 693 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-203ENST00000353578 EVI5O60447 810 aa14.4□□□□□ -0.11
COL6A3-203ENST00000353578 PSMD7P51665 324 aa14.4□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms