RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 SNRPA1P09661 255 aaKnown RBP12.08□□□□□ -0.48
HMGN1-201ENST00000288344 LRP10Q7Z4F1 713 aa12.08□□□□□ -0.48
HMGN1-201ENST00000288344 TTC5Q8N0Z6 440 aa12.08□□□□□ -0.48
HMGN1-201ENST00000288344 USP42Q9H9J4 1324 aaKnown RBP12.07□□□□□ -0.48
HMGN1-201ENST00000288344 STARD3NLO95772 234 aa12.07□□□□□ -0.48
HMGN1-201ENST00000288344 NEFMP07197 916 aa12.07□□□□□ -0.48
HMGN1-201ENST00000288344 IL6STP40189 918 aaPredicted RBP12.07□□□□□ -0.48
HMGN1-201ENST00000288344 CCDC27Q2M243 656 aa12.07□□□□□ -0.48
HMGN1-201ENST00000288344 ZNF579Q8NAF0 562 aaKnown RBP12.07□□□□□ -0.48
HMGN1-201ENST00000288344 FHDC1Q9C0D6 1143 aaPredicted RBP12.07□□□□□ -0.48
HMGN1-201ENST00000288344 SRP68Q9UHB9 627 aaKnown RBP12.07□□□□□ -0.48
HMGN1-201ENST00000288344 MSL1Q68DK7 614 aa12.06□□□□□ -0.48
HMGN1-201ENST00000288344 NLGN1Q8N2Q7 840 aa12.06□□□□□ -0.48
HMGN1-201ENST00000288344 MRS2Q9HD23 443 aa12.06□□□□□ -0.48
HMGN1-201ENST00000288344 NARFQ9UHQ1 456 aa12.06□□□□□ -0.48
HMGN1-201ENST00000288344 LMOD3Q0VAK6 560 aa12.05□□□□□ -0.48
HMGN1-201ENST00000288344 PDIA6Q15084 440 aa12.05□□□□□ -0.48
HMGN1-201ENST00000288344 NEUROD2Q15784 382 aa12.05□□□□□ -0.48
HMGN1-201ENST00000288344 RFC4P35249 363 aa12.04□□□□□ -0.48
HMGN1-201ENST00000288344 DDR1Q08345 913 aa12.04□□□□□ -0.48
HMGN1-201ENST00000288344 CD2APQ9Y5K6 639 aa12.04□□□□□ -0.48
HMGN1-201ENST00000288344 KIF13BQ9NQT8 1826 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 CAMTA2O94983 1202 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 MMP10P09238 476 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 CANXP27824 592 aaKnown RBP12.03□□□□□ -0.48
HMGN1-201ENST00000288344 POLD1P28340 1107 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 CLCN6P51797 869 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 USPL1Q5W0Q7 1092 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 WWC1Q8IX03 1113 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 COL15A1P39059 1388 aa12.03□□□□□ -0.48
HMGN1-201ENST00000288344 KIAA1551Q9HCM1 1747 aa12.02□□□□□ -0.49
HMGN1-201ENST00000288344 POLRMTO00411 1230 aaKnown RBP12.02□□□□□ -0.49
HMGN1-201ENST00000288344 GABBR2O75899 941 aa12.02□□□□□ -0.49
HMGN1-201ENST00000288344 KRT24Q2M2I5 525 aa12.02□□□□□ -0.49
HMGN1-201ENST00000288344 NLGN2Q8NFZ4 835 aa12.02□□□□□ -0.49
HMGN1-201ENST00000288344 TSPYL4Q9UJ04 414 aa12.02□□□□□ -0.49
HMGN1-201ENST00000288344 NRXN2Q9P2S2 1712 aa12.01□□□□□ -0.49
HMGN1-201ENST00000288344 KCNA3P22001 575 aa12.01□□□□□ -0.49
HMGN1-201ENST00000288344 PIP4K2AP48426 406 aaPredicted RBP12.01□□□□□ -0.49
HMGN1-201ENST00000288344 NFIXQ14938 502 aa12.01□□□□□ -0.49
HMGN1-201ENST00000288344 MBIPQ9NS73 344 aa12.01□□□□□ -0.49
HMGN1-201ENST00000288344 PPP1R1BQ9UD71 204 aaPredicted RBP12.01□□□□□ -0.49
HMGN1-201ENST00000288344 LAMB4A4D0S4 1761 aa12.01□□□□□ -0.49
HMGN1-201ENST00000288344 ZNF521Q96K83 1311 aa12□□□□□ -0.49
HMGN1-201ENST00000288344 CCER2I3L3R5 266 aa12□□□□□ -0.49
HMGN1-201ENST00000288344 PHF12Q96QT6 1004 aa12□□□□□ -0.49
HMGN1-201ENST00000288344 IFT57Q9NWB7 429 aa12□□□□□ -0.49
HMGN1-201ENST00000288344 TBC1D2BQ9UPU7 963 aa12□□□□□ -0.49
HMGN1-201ENST00000288344 ERBB4Q15303 1308 aa11.99□□□□□ -0.49
HMGN1-201ENST00000288344 A0A087WZG4 1122 aa11.99□□□□□ -0.49
HMGN1-201ENST00000288344 PYGBP11216 843 aa11.99□□□□□ -0.49
HMGN1-201ENST00000288344 CLEC4GQ6UXB4 293 aa11.99□□□□□ -0.49
HMGN1-201ENST00000288344 AFDNP55196 1824 aaKnown RBP11.99□□□□□ -0.49
HMGN1-201ENST00000288344 C10orf71Q711Q0 1435 aa11.98□□□□□ -0.49
HMGN1-201ENST00000288344 IL16Q14005 1332 aa11.98□□□□□ -0.49
HMGN1-201ENST00000288344 ZPR1O75312 459 aa11.98□□□□□ -0.49
HMGN1-201ENST00000288344 HOXB7P09629 217 aa11.98□□□□□ -0.49
HMGN1-201ENST00000288344 PROSER3Q2NL68 480 aa11.98□□□□□ -0.49
HMGN1-201ENST00000288344 TBC1D9BQ66K14 1250 aa11.98□□□□□ -0.49
HMGN1-201ENST00000288344 SCN7AQ01118 1682 aa11.98□□□□□ -0.49
HMGN1-201ENST00000288344 BCORQ6W2J9 1755 aa11.97□□□□□ -0.49
HMGN1-201ENST00000288344 HLFQ16534 295 aa11.97□□□□□ -0.49
HMGN1-201ENST00000288344 TTLL7Q6ZT98 887 aa11.97□□□□□ -0.49
HMGN1-201ENST00000288344 C8orf58Q8NAV2 365 aa11.97□□□□□ -0.49
HMGN1-201ENST00000288344 PXDNLA1KZ92 1463 aa11.96□□□□□ -0.49
HMGN1-201ENST00000288344 ERVV-1B6SEH8 477 aa11.96□□□□□ -0.49
HMGN1-201ENST00000288344 GTPBP6O43824 516 aaPredicted RBP11.96□□□□□ -0.49
HMGN1-201ENST00000288344 TGFB2P61812 414 aa11.96□□□□□ -0.49
HMGN1-201ENST00000288344 GNAI1P63096 354 aa11.96□□□□□ -0.49
HMGN1-201ENST00000288344 DZIP3Q86Y13 1208 aaKnown RBP11.96□□□□□ -0.49
HMGN1-201ENST00000288344 WDR63Q8IWG1 891 aa11.96□□□□□ -0.49
HMGN1-201ENST00000288344 NGEFQ8N5V2 710 aa11.96□□□□□ -0.49
HMGN1-201ENST00000288344 TSPYL6Q8N831 410 aa11.96□□□□□ -0.49
HMGN1-201ENST00000288344 BRCA1P38398 1863 aaKnown RBP11.95□□□□□ -0.5
HMGN1-201ENST00000288344 SENP3-EIF4A1A0A087X0R7 540 aa11.95□□□□□ -0.5
HMGN1-201ENST00000288344 SERPINB2P05120 415 aa11.95□□□□□ -0.5
HMGN1-201ENST00000288344 YBX3P16989 372 aaKnown RBP eCLIP11.95□□□□□ -0.56e-11■□□□□ 9.1
HMGN1-201ENST00000288344 DUSP27Q5VZP5 1158 aa11.95□□□□□ -0.5
HMGN1-201ENST00000288344 FAM9BQ8IZU0 186 aa11.95□□□□□ -0.5
HMGN1-201ENST00000288344 DDX21Q9NR30 783 aaKnown RBP eCLIP11.95□□□□□ -0.5
HMGN1-201ENST00000288344 NUP98P52948 1817 aa11.95□□□□□ -0.5
HMGN1-201ENST00000288344 KLRG2A4D1S0 409 aaPredicted RBP11.94□□□□□ -0.5
HMGN1-201ENST00000288344 CALD1Q05682 793 aaKnown RBP11.94□□□□□ -0.5
HMGN1-201ENST00000288344 TAOK2Q9UL54 1235 aa11.94□□□□□ -0.5
HMGN1-201ENST00000288344 PARP3Q9Y6F1 533 aa11.94□□□□□ -0.5
HMGN1-201ENST00000288344 MAP3K15Q6ZN16 1313 aa11.94□□□□□ -0.5
HMGN1-201ENST00000288344 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.93□□□□□ -0.5
HMGN1-201ENST00000288344 STK25O00506 426 aa11.93□□□□□ -0.5
HMGN1-201ENST00000288344 ANXA1P04083 346 aa11.93□□□□□ -0.5
HMGN1-201ENST00000288344 ZNF34Q8IZ26 560 aa11.93□□□□□ -0.5
HMGN1-201ENST00000288344 ZFP91Q96JP5 570 aaPredicted RBP11.93□□□□□ -0.5
HMGN1-201ENST00000288344 LAS1LQ9Y4W2 734 aaKnown RBP11.93□□□□□ -0.5
HMGN1-201ENST00000288344 ANKRD31Q8N7Z5 1873 aa11.93□□□□□ -0.5
HMGN1-201ENST00000288344 N4BP2Q86UW6 1770 aaPredicted RBP11.92□□□□□ -0.5
HMGN1-201ENST00000288344 A0A0G2JLW4 131 aa11.92□□□□□ -0.5
HMGN1-201ENST00000288344 DPEP1P16444 411 aa11.92□□□□□ -0.5
HMGN1-201ENST00000288344 EIF2S2P20042 333 aaKnown RBP11.92□□□□□ -0.5
HMGN1-201ENST00000288344 DIEXFQ68CQ4 756 aaKnown RBP11.92□□□□□ -0.5
HMGN1-201ENST00000288344 PRR5LQ6MZQ0 368 aa11.92□□□□□ -0.5
HMGN1-201ENST00000288344 TRMT2AQ8IZ69 625 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms