RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 GLIPR2Q9H4G4 154 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 SLAMF7Q9NQ25 335 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 FAM120CQ9NX05 1096 aaKnown RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 C19orf25Q9UFG5 118 aaPredicted RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 WDFY3Q8IZQ1 3526 aa11.46□□□□□ -0.58
SDC1-206ENST00000482879 IGHV3-20A0A0C4DH32 117 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 LOC100653049A0A140TA62 436 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 PRSS51A0A1B0GVH4 220 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 DYTNA2CJ06 578 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 RNASET2O00584 256 aaKnown RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 PCDH17O14917 1159 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 KRT34O76011 436 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 CPSF4O95639 269 aaKnown RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 SNRPB2P08579 225 aaKnown RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 NT5EP21589 574 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 MMP11P24347 488 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 FRKP42685 505 aaPredicted RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 SRSF6Q13247 344 aaKnown RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 MAPRE2Q15555 327 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 SFT2D3Q587I9 215 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 ZNF551Q7Z340 670 aaPredicted RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 ANKRD46Q86W74 232 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 RAB43Q86YS6 212 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 TREML1Q86YW5 311 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 ADCY4Q8NFM4 1077 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 ZFP28Q8NHY6 868 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 SUN3Q8TAQ9 357 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 DOK4Q8TEW6 326 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 TSPEARQ8WU66 669 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 OR5P2Q8WZ92 322 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 C8orf44Q96CB5 159 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 ERP27Q96DN0 273 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 AMDHD1Q96NU7 426 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 MESP1Q9BRJ9 268 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 SLC25A23Q9BV35 468 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 TMEM121BQ9BXQ6 578 aaPredicted RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 RMND5AQ9H871 391 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 ADAP2Q9NPF8 381 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 ACSS1Q9NUB1 689 aaPredicted RBP11.45□□□□□ -0.58
SDC1-206ENST00000482879 PCDHGB4Q9UN71 923 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 HS3ST3B1Q9Y662 390 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 MED13Q9UHV7 2174 aa11.45□□□□□ -0.58
SDC1-206ENST00000482879 DOCK10Q96BY6 2186 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 LOC102723996A0A087X1L8 192 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 A0A1W2PP18 115 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 CAPN14A8MX76 684 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 C17orf105B2RV13 164 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 SCN2BO60939 215 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 C6orf47O95873 294 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 ATP1B1P05026 303 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 CAPN3P20807 821 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 GALNSP34059 522 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 PTGER1P34995 402 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 GPC1P35052 558 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 EEF1A2Q05639 463 aaKnown RBP11.44□□□□□ -0.58
SDC1-206ENST00000482879 HSPB3Q12988 150 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 IL10RAQ13651 578 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 CYLC2Q14093 348 aaPredicted RBP11.44□□□□□ -0.58
SDC1-206ENST00000482879 TLR1Q15399 786 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 ELAVL1Q15717 326 aaKnown RBP11.44□□□□□ -0.58
SDC1-206ENST00000482879 LTB4RQ15722 352 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 MAPKAPK3Q16644 382 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 C6orf163Q5TEZ5 329 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 CPZQ66K79 652 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 KIRREL2Q6UWL6 708 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 DGAT2L6Q6ZPD8 337 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 MSANTD1Q6ZTZ1 278 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 PPP1R32Q7Z5V6 425 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 SNX32Q86XE0 403 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 CLECL1Q8IZS7 167 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 FITM2Q8N6M3 262 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 POU5F2Q8N7G0 328 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 OR9A2Q8NGT5 310 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 RP9Q8TA86 221 aaKnown RBP11.44□□□□□ -0.58
SDC1-206ENST00000482879 RIT1Q92963 219 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 NACC2Q96BF6 587 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 ITCHQ96J02 903 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 VPS50Q96JG6 964 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 SLC52A3Q9NQ40 469 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 BTNL2Q9UIR0 455 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 NDUFAF1Q9Y375 327 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 CLCA3PQ9Y6N3 262 aa11.44□□□□□ -0.58
SDC1-206ENST00000482879 IGF2RP11717 2491 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 CDC14CA4D256 554 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 ASPDHA6ND91 283 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 C1QTNF9BB2RNN3 333 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 PEX12O00623 359 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 SOCS6O14544 535 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 ANGPT2O15123 496 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 DYRK3O43781 588 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 SEC24DO94855 1032 aaPredicted RBP11.43□□□□□ -0.58
SDC1-206ENST00000482879 CAPNS1P04632 268 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 ABCB1P08183 1280 aaPredicted RBP11.43□□□□□ -0.58
SDC1-206ENST00000482879 C1QTNF9P0C862 333 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 COX4I1P13073 169 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 EIF2S3P41091 472 aaKnown RBP11.43□□□□□ -0.58
SDC1-206ENST00000482879 CDK9P50750 372 aaKnown RBP11.43□□□□□ -0.58
SDC1-206ENST00000482879 PGDP52209 483 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 LRRC74AQ0VAA2 488 aa11.43□□□□□ -0.58
SDC1-206ENST00000482879 MAP4K2Q12851 820 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms