RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SUB1P53999 127 aaKnown RBP eCLIP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CTXN1P60606 82 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDK3Q00526 305 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TARBP2Q15633 366 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SMTNL2Q2TAL5 461 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ACSBG2Q5FVE4 666 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GPR157Q5UAW9 335 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 KLHDC10Q6PID8 442 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IQCHQ86VS3 1027 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ERI1Q8IV48 349 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CMTM1Q8IZ96 169 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SPTSSAQ969W0 71 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CERS2Q96G23 380 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PIWIL1Q96J94 861 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SUCNR1Q9BXA5 334 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FBXL3Q9UKT7 428 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RAB22AQ9UL26 194 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR6C74A6NCV1 312 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FABP12A6NFH5 140 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ATMINO43313 823 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PRAMEF2O60811 474 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SMIM17P0DL12 118 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HNRNPLP14866 589 aaKnown RBP eCLIP2.68□□□□□ -1.988e-7■■■□□ 16.4
SCN1A-219ENST00000641575 PORP16435 677 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 AKR1C4P17516 323 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CCND3P30281 292 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 S100A3P33764 101 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ETV6P41212 452 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CCR10P46092 362 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GSK3BP49841 420 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDK7P50613 346 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ART1P52961 327 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDK6Q00534 326 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 BNIP3Q12983 259 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TRIM28Q13263 835 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MTM1Q13496 603 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MAP1SQ66K74 1059 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF600Q6ZNG1 722 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SHFQ7M4L6 423 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 IGFN1Q86VF2 1251 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 P2RY8Q86VZ1 359 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FBXO16Q8IX29 292 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DND1Q8IYX4 353 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TRMT2AQ8IZ69 625 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR4N2Q8NGD1 307 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 OR5M3Q8NGP4 307 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DNASE1L2Q92874 299 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ARL11Q969Q4 196 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ANAPC16Q96DE5 110 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 LINGO1Q96FE5 620 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 P2RX7Q99572 595 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 KXD1Q9BQD3 176 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 LGR4Q9BXB1 951 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TPK1Q9H3S4 243 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM185BQ9H7F4 350 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 FN3KRPQ9HA64 309 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 S100A14Q9HCY8 104 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ARMC1Q9NVT9 282 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ACSL5Q9ULC5 683 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC6A5Q9Y345 797 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PREX2Q70Z35 1606 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 A0A087X1B8 175 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 A0A0A6YYK5 440 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CHEK1O14757 476 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SLC31A2O15432 143 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MFSD11O43934 449 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CIDEAO60543 219 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 SEC22BO75396 215 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PRAMEF12O95522 483 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DBIP07108 87 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 NUDT17P0C025 328 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CDH1P12830 882 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ADH6P28332 368 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 EIF2DP41214 584 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MC2RQ01718 297 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MADCAM1Q13477 382 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 DNASE1L3Q13609 305 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GK2Q14410 553 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF529Q6P280 563 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM207Q6UWW9 146 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 MMP21Q8N119 569 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZFP82Q8N141 532 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PSD4Q8NDX1 1056 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 STAG3L4Q8TBR4 150 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 AURKBQ96GD4 344 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 PPP3R2Q96LZ3 170 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RBCK1Q9BYM8 510 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RNF39Q9H2S5 420 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 GJB4Q9NTQ9 266 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 C1orf109Q9NX04 203 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 VNN3Q9NY84 501 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 RCOR3Q9P2K3 495 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 EBF1Q9UH73 591 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 CNOT6Q9ULM6 557 aaKnown RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ARHGAP33O14559 1287 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM127O75204 238 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ARHGEF15O94989 841 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 TSPAN12O95859 305 aa2.68□□□□□ -1.98
SCN1A-219ENST00000641575 HOXD8P13378 290 aaPredicted RBP2.68□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF43P17038 809 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms