RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PMF1-BGLAPU3KQ54 211 aa19.77■□□□□ 0.76
CCDC88B-203ENST00000359902 ATG2AQ2TAZ0 1938 aa19.77■□□□□ 0.75
CCDC88B-203ENST00000359902 ARRDC5A6NEK1 342 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 CLDN24A6NM45 220 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 CLDN25C9JDP6 229 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 CLEC3AO75596 197 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 APODP05090 189 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 SERPIND1P05546 499 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 NUDT6P53370 316 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 PTGES3Q15185 160 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 PSMA8Q8TAA3 256 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 LGALS12Q96DT0 336 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 ITPAQ9BY32 194 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 ACSS1Q9NUB1 689 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 TBCCD1Q9NVR7 557 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 TAS2R7Q9NYW3 318 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 SLC6A14Q9UN76 642 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 A0A0A6YYD5 115 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 LRIT2A6NDA9 550 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 SH3BP5O60239 455 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 NADKO95544 446 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 LIPAP38571 399 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 CCT3P49368 545 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 RAB28P51157 221 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 TBCEQ15813 527 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 DGUOKQ16854 277 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 KLHL17Q6TDP4 642 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 DCDC5Q6ZRR9 648 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 LINC00299Q6ZSB3 139 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 SLC38A4Q969I6 547 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 DPH7Q9BTV6 452 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 SERHL2Q9H4I8 314 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 NMNAT1Q9HAN9 279 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 GPR83Q9NYM4 423 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 CCDC88CQ9P219 2028 aa19.76■□□□□ 0.75
CCDC88B-203ENST00000359902 M0R082 166 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 M0R129 80 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 CEACAM5P06731 702 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 RAB15P59190 212 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 COLEC12Q5KU26 742 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 ZNF513Q8N8E2 541 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 MAPKAP1Q9BPZ7 522 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 C17orf62Q9BQA9 187 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 TIMM29Q9BSF4 260 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 BTBD1Q9H0C5 482 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 AKIP1Q9NQ31 210 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 IMPAD1Q9NX62 359 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 ERGIC3Q9Y282 383 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 TRBV4-1A0A0J9YWV2 114 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 SEMA7AO75326 666 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 TRA2BP62995 288 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 ITGADQ13349 1161 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 TP53BP2Q13625 1128 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 ZNF846Q147U1 533 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 MLC1Q15049 377 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 SYT16Q17RD7 645 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 TMEM236Q5W0B7 351 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 ZNF793Q6ZN11 406 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 BTLAQ7Z6A9 289 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 FAM20CQ8IXL6 584 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 NLGN4XQ8N0W4 816 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 TMCO5AQ8N6Q1 288 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 COX4I2Q96KJ9 171 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 KXD1Q9BQD3 176 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 C1QTNF2Q9BXJ5 285 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 KLHL31Q9H511 634 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 IGFLR1Q9H665 355 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 FTSJ1Q9UET6 329 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 DUSP12Q9UNI6 340 aa19.75■□□□□ 0.75
CCDC88B-203ENST00000359902 PRR23AA6NEV1 266 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 WASHC1A8K0Z3 465 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 SULT1C4O75897 302 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 STSP08842 583 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 PKLRP30613 574 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 NDUFAF5Q5TEU4 345 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 TCTN3Q6NUS6 607 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 WASH2PQ6VEQ5 465 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 TAGAPQ8N103 731 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 OR2L8Q8NGY9 312 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 ENOPH1Q9UHY7 261 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 ZAR1LA6NP61 321 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 FAM227AF5H4B4 570 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 PDE9AO76083 593 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 DRD2P14416 443 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 CHMP24386 653 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 TGFBR1P36897 503 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 CTSKP43235 329 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 SSR2P43308 183 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 SGCGQ13326 291 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 FRMPD2BQ6IN97 320 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 NUDT18Q6ZVK8 323 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 CENPSQ8N2Z9 138 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 CHPT1Q8WUD6 406 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 BTBD2Q9BX70 525 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 GLIPR2Q9H4G4 154 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 HMG20AQ9NP66 347 aa19.74■□□□□ 0.75
CCDC88B-203ENST00000359902 CKAP5Q14008 2032 aa19.73■□□□□ 0.75
CCDC88B-203ENST00000359902 PRAMEF27A3QJZ7 478 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms