RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 QSOX2Q6ZRP7 698 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 MOB2Q70IA6 237 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 C16orf62Q7Z3J2 963 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 RBFAQ8N0V3 343 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 IQCF1Q8N6M8 205 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 TCEANCQ8N8B7 351 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 C1GALT1C1Q96EU7 318 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 C11orf24Q96F05 449 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 RBP7Q96R05 134 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 HTATIP2Q9BUP3 242 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 C1QTNF6Q9BXI9 259 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 RSPO3Q9BXY4 272 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 CDCP1Q9H5V8 836 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ERVMER34-1Q9H9K5 563 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CUEDC1Q9NWM3 386 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 BTNL2Q9UIR0 455 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ST3GAL5Q9UNP4 418 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 EXO1Q9UQ84 846 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 NCKAP1Q9Y2A7 1128 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ENPP4Q9Y6X5 453 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ARRDC5A6NEK1 342 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 PRKYO43930 277 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 SEMA7AO75326 666 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ETHE1O95571 254 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CD160O95971 181 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 TP53P04637 393 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 OSMP13725 252 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 IDSP22304 550 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ITPKAP23677 461 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 BTCP35070 178 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 SLC6A12P48065 614 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 GAS1P54826 345 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CCL23P55773 120 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 C21orf58P58505 322 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 BTG1P62324 171 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 RPS24P62847 133 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 RPA4Q13156 261 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 C1DQ13901 141 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 PUM1Q14671 1186 aaKnown RBP eCLIP6.47□□□□□ -1.37
VPS39-202ENST00000348544 GRK1Q15835 563 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 SNAPC1Q16533 368 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 LGALSLQ3ZCW2 172 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 ZNF57Q68EA5 555 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 ARSKQ6UWY0 536 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 UNC5DQ6UXZ4 953 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CERS6Q6ZMG9 384 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 TMEM91Q6ZNR0 172 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 OTOP2Q7RTS6 562 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 LRRC70Q7Z2Q7 622 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ZFP41Q8N8Y5 198 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 OR4A15Q8NGL6 344 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 CEP76Q8TAP6 659 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 GEMIN6Q8WXD5 167 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 AP3S1Q92572 193 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 MTERF1Q99551 399 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 ADGRE3Q9BY15 652 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 GPR63Q9BZJ6 419 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 MED28Q9H204 178 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 MAGEH1Q9H213 219 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 GHITMQ9H3K2 345 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 RETREG1Q9H6L5 497 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ASB8Q9H765 288 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ENOPH1Q9UHY7 261 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ACSL6Q9UKU0 697 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 HCN2Q9UL51 889 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ING4Q9UNL4 249 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 DIMT1Q9UNQ2 313 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 SLC22A14Q9Y267 594 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 RPL36Q9Y3U8 105 aaKnown RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 PCDHB7Q9Y5E2 793 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 PPP2R3BQ9Y5P8 575 aa6.47□□□□□ -1.37
VPS39-202ENST00000348544 ZFP37Q9Y6Q3 630 aaPredicted RBP6.47□□□□□ -1.37
VPS39-202ENST00000348544 KIAA1671Q9BY89 1806 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 TRBC2A0A5B9 178 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 C7orf66A4D0T2 115 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 CBX4O00257 560 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 TOR1AO14656 332 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 KDELR3O43731 214 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 PPIBP23284 216 aaKnown RBP6.46□□□□□ -1.37
VPS39-202ENST00000348544 SOX18P35713 384 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 SGSHP51688 502 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 HBA1P69905 142 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 TWF1Q12792 350 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 ILKQ13418 452 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 NFATC2Q13469 925 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 DDX39BQ13838 428 aaKnown RBP6.46□□□□□ -1.37
VPS39-202ENST00000348544 INSL4Q14641 139 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 CCDC85BQ15834 202 aaPredicted RBP6.46□□□□□ -1.37
VPS39-202ENST00000348544 COL28A1Q2UY09 1125 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 GCNT6Q5T4J0 391 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 CPTPQ5TA50 214 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 METAP1DQ6UB28 335 aaPredicted RBP6.46□□□□□ -1.37
VPS39-202ENST00000348544 LINGO4Q6UY18 593 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 LAPTM4BQ86VI4 370 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 ADGRG3Q86Y34 549 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 THEM5Q8N1Q8 247 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 FBXO22Q8NEZ5 403 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 GATAD2BQ8WXI9 593 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 RIT1Q92963 219 aa6.46□□□□□ -1.37
VPS39-202ENST00000348544 FBXW5Q969U6 566 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms