RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 NDUFAF7Q7L592 441 aa16.41■□□□□ 0.22
SHMT2-225ENST00000556798 PARP9Q8IXQ6 854 aa16.41■□□□□ 0.22
SHMT2-225ENST00000556798 MMP21Q8N119 569 aa16.41■□□□□ 0.22
SHMT2-225ENST00000556798 VPS50Q96JG6 964 aa16.41■□□□□ 0.22
SHMT2-225ENST00000556798 ZNF700Q9H0M5 742 aa16.41■□□□□ 0.22
SHMT2-225ENST00000556798 MS4A12Q9NXJ0 267 aa16.41■□□□□ 0.22
SHMT2-225ENST00000556798 RALYQ9UKM9 306 aaKnown RBP16.41■□□□□ 0.22
SHMT2-225ENST00000556798 ATRXP46100 2492 aa16.41■□□□□ 0.22
SHMT2-225ENST00000556798 CPAMD8Q8IZJ3 1885 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 A0A1W2PQ72 361 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 WASHC1A8K0Z3 465 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 A8MUA0 341 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 SLC28A1O00337 649 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 PCDH17O14917 1159 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 FGF17O60258 216 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 JUNP05412 331 aaKnown RBP16.4■□□□□ 0.22
SHMT2-225ENST00000556798 TIA1P31483 386 aaKnown RBP eCLIP16.4■□□□□ 0.22
SHMT2-225ENST00000556798 OR4D2P58180 307 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 Q0VFX4 171 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 NR6A1Q15406 480 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 RNF165Q6ZSG1 346 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 Q6ZSR9 355 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 OR4N5Q8IXE1 308 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 CLEC1AQ8NC01 280 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 WDR77Q9BQA1 342 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-225ENST00000556798 ILKAPQ9H0C8 392 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-225ENST00000556798 RPF2Q9H7B2 306 aaKnown RBP16.4■□□□□ 0.22
SHMT2-225ENST00000556798 MANSC1Q9H8J5 431 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 RIC8BQ9NVN3 520 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 GIMAP2Q9UG22 337 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 MCM8Q9UJA3 840 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 RAP2CQ9Y3L5 183 aa16.4■□□□□ 0.22
SHMT2-225ENST00000556798 POLR3HQ9Y535 204 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-225ENST00000556798 GNG14A0A1W2PPG7 69 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 RGS14O43566 566 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 CTNSO60931 367 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 ITGA3P26006 1051 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 TLX1P31314 330 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 ACTN3Q08043 901 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 AIMP2Q13155 320 aaKnown RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 LY6DQ14210 128 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 PDCD2Q16342 344 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 NDUFAF5Q5TEU4 345 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 PAPD4Q6PIY7 484 aaKnown RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 EXD3Q8N9H8 876 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 ANKRD9Q96BM1 317 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 TM4SF18Q96CE8 201 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 C11orf24Q96F05 449 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 PPP1R36Q96LQ0 422 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 C3orf30Q96M34 536 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 UBL7Q96S82 380 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 LRTM1Q9HBL6 345 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 ATP13A2Q9NQ11 1180 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 PNO1Q9NRX1 252 aaKnown RBP16.39■□□□□ 0.21
SHMT2-225ENST00000556798 PNPOQ9NVS9 261 aa16.39■□□□□ 0.21
SHMT2-225ENST00000556798 CHD6Q8TD26 2715 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 ATP6AP2A0A1C7CYW4 349 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 BLACEA4D250 179 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 SNNO75324 88 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-225ENST00000556798 SEC22BO75396 215 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 ATP6AP2O75787 350 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 NR1D1P20393 614 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 PRPH2P23942 346 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 RPL14P50914 215 aaKnown RBP16.38■□□□□ 0.21
SHMT2-225ENST00000556798 RPL38P63173 70 aaKnown RBP16.38■□□□□ 0.21
SHMT2-225ENST00000556798 FOLH1Q04609 750 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 STX4Q12846 297 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 KCNAB2Q13303 367 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 GALNTL6Q49A17 601 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 XKR7Q5GH72 579 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 ATG16L1Q676U5 607 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 TRIM42Q8IWZ5 723 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 GALNT16Q8N428 558 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 FDCSPQ8NFU4 85 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 CDC26Q8NHZ8 85 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 IMMP1LQ96LU5 166 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 LPAR4Q99677 370 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 TUBB6Q9BUF5 446 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 ALOXE3Q9BYJ1 711 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 WDR41Q9HAD4 459 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 THAP1Q9NVV9 213 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 C1orf109Q9NX04 203 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 C5AR2Q9P296 337 aa16.38■□□□□ 0.21
SHMT2-225ENST00000556798 FAM208BQ5VWN6 2430 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 LSM1O15116 133 aaKnown RBP16.37■□□□□ 0.21
SHMT2-225ENST00000556798 PGRMC2O15173 223 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 MYO1DO94832 1006 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 IFNA16P05015 189 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 IL3P08700 152 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 ANXA4P09525 319 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-225ENST00000556798 ALDH9A1P49189 494 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 TAS2R50P59544 299 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 KIAA0040Q15053 153 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 BTBD16Q32M84 506 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 OR52E8Q6IFG1 317 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 NOXRED1Q6NXP6 359 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 GALNT18Q6P9A2 607 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 RAB3IL1Q8TBN0 382 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 C16orf78Q8WTQ4 265 aa16.37■□□□□ 0.21
SHMT2-225ENST00000556798 DYDC1Q8WWB3 177 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms