RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 FOLR1P15328 257 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 CKMT2P17540 419 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 TCN1P20061 433 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 CPN2P22792 545 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ACP1P24666 158 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 NTSP30990 170 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 BUD31P41223 144 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 GCGRP47871 477 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 GSK3BP49841 420 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 PDX1P52945 283 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ITGA1P56199 1179 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 RAB38P57729 211 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 EEFSECP57772 596 aaKnown RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 ACTR3P61158 418 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SKP1P63208 163 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 HBA1P69905 142 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SHC2P98077 582 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 LIPEQ05469 1076 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SPEM2Q0P670 501 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SLC14A1Q13336 389 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 COL9A2Q14055 689 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 CCNIQ14094 377 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 FAM53BQ14153 422 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 GRM7Q14831 915 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 CEBPEQ15744 281 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 FXNQ16595 210 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 TMTC4Q5T4D3 741 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 OR52E8Q6IFG1 317 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 NIPAL1Q6NVV3 410 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 FAM180BQ6P0A1 224 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ARHGAP22Q7Z5H3 698 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 NAXDQ8IW45 347 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SLITRK4Q8IW52 837 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 DTWD1Q8N5C7 304 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 RCBTB1Q8NDN9 531 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 OR5T3Q8NGG3 340 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 OR1L3Q8NH93 324 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 JADE3Q92613 823 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 UCN3Q969E3 161 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ZNF501Q96CX3 271 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 ZBED6CLQ96FA7 236 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 GFM1Q96RP9 751 aaKnown RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 PRRX2Q99811 253 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SH3GL1Q99961 368 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 KCTD14Q9BQ13 255 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 LRFN3Q9BTN0 628 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 NPLQ9BXD5 320 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 TRIM4Q9C037 500 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SPRTNQ9H040 489 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 KAT8Q9H7Z6 458 aaKnown RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 FANCEQ9HB96 536 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 TMEM9BQ9NQ34 198 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SLC35C2Q9NQQ7 365 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 RXFP3Q9NSD7 469 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SEMA4GQ9NTN9 838 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ACSS1Q9NUB1 689 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 MS4A12Q9NXJ0 267 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SIDT1Q9NXL6 827 aaKnown RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 TAS2R9Q9NYW1 312 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ZNF282Q9UDV7 671 aaPredicted RBP6.28□□□□□ -1.4
VPS41-204ENST00000413141 CES1P1Q9UKY3 287 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 VPS4AQ9UN37 437 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ERVK-11Q9UQG0 969 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 ENTPD4Q9Y227 616 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 GMEB1Q9Y692 573 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 SPACA6W5XKT8 324 aa6.28□□□□□ -1.4
VPS41-204ENST00000413141 CABIN1Q9Y6J0 2220 aa6.27□□□□□ -1.4
VPS41-204ENST00000413141 RNF103-CHMP3A0A140T963 221 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 A0A1W2PS29 197 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 WASHC1A8K0Z3 465 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 MYO1GB0I1T2 1018 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 FAM220BPB1ANY3 271 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 CLIC1O00299 241 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 CYR61O00622 381 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 PGRMC2O15173 223 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 HYAL3O43820 417 aaPredicted RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 LRP3O75074 770 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 ERAL1O75616 437 aaKnown RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 BCAS2O75934 225 aaPredicted RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 ATP6V1G2O95670 118 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 C1QCP02747 245 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 ATP6V1B2P21281 511 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 PPIBP23284 216 aaKnown RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 MSX2P35548 267 aaPredicted RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 SOAT1P35610 550 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 AVPR1BP47901 424 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 CDK9P50750 372 aaKnown RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 GZMMP51124 257 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 NCBP2P52298 156 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS41-204ENST00000413141 SIM1P81133 766 aaPredicted RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 MS4A2Q01362 244 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 ACY1Q03154 408 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 DUSP2Q05923 314 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 TRAP1Q12931 704 aaKnown RBP6.27□□□□□ -1.41
VPS41-204ENST00000413141 BNIP2Q12982 314 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 HSPB3Q12988 150 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 RIPK1Q13546 671 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 DSG2Q14126 1118 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 SPIDRQ14159 915 aa6.27□□□□□ -1.41
VPS41-204ENST00000413141 FLOT2Q14254 428 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms