RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TMEM145Q8NBT3 493 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.83■□□□□ 0.121e-6■■■□□ 17.2
VPS54-201ENST00000272322 HRASLS5Q96KN8 279 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 CHST8Q9H2A9 424 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 EHD1Q9H4M9 534 aa15.83■□□□□ 0.12
VPS54-201ENST00000272322 SEC23BQ15437 767 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 TSTQ16762 297 aaKnown RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 ZC3H12BQ5HYM0 836 aaKnown RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 SHISA5Q8N114 240 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 SLC34A3Q8N130 599 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 OR8K5Q8NH50 307 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 HPS1Q92902 700 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 SEC14L3Q9UDX4 400 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 FFAR1O14842 300 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 B4GALT2O60909 372 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 CA3P07451 260 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 TARDBPQ13148 414 aaKnown RBP eCLIP15.82■□□□□ 0.12
VPS54-201ENST00000272322 ELAVL3Q14576 367 aaKnown RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 ZNF846Q147U1 533 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 LASP1Q14847 261 aaKnown RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 WSCD2Q2TBF2 565 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 SHFQ7M4L6 423 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 PRSS48Q7RTY5 328 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 ZNF707Q96C28 371 aaPredicted RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 ITPAQ9BY32 194 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 BHLHE41Q9C0J9 482 aaPredicted RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 MARCH7Q9H992 704 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 IL23AQ9NPF7 189 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 SAGE1Q9NXZ1 904 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 IRAK3Q9Y616 596 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 CFAP54Q96N23 3096 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 CCNB2O95067 398 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 DLGAP3O95886 979 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 TBX6O95947 436 aaPredicted RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 SEMG1P04279 462 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 NR2F1P10589 423 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 AZGP1P25311 298 aaKnown RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 TIE1P35590 1138 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 GGT2P36268 569 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 PRMT2P55345 433 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 TANGO2Q6ICL3 276 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 FAM83FQ8NEG4 500 aaPredicted RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 RAD9AQ99638 391 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 SEMA3GQ9NS98 782 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 ZCCHC3Q9NUD5 404 aaKnown RBP15.82■□□□□ 0.12
VPS54-201ENST00000272322 TVP23BQ9NYZ1 205 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 VPS13AQ96RL7 3174 aa15.82■□□□□ 0.12
VPS54-201ENST00000272322 SEMA7AO75326 666 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 SLC35G4P0C7Q5 338 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 CHMP24386 653 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 GJA8P48165 433 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 IL18R1Q13478 541 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 GPR19Q15760 415 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 SYT6Q5T7P8 510 aaPredicted RBP15.81■□□□□ 0.12
VPS54-201ENST00000272322 KRT78Q8N1N4 520 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 DNAJC22Q8N4W6 341 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 OR4D11Q8NGI4 311 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 YIPF6Q96EC8 236 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 C14orf119Q9NWQ9 140 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 OR2A25A4D2G3 310 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 LINC01553A4QN01 128 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 SLC9A3R1O14745 358 aaPredicted RBP15.81■□□□□ 0.12
VPS54-201ENST00000272322 SLC22A1O15245 554 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 CH25HO95992 272 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 PTX3P26022 381 aaPredicted RBP15.81■□□□□ 0.12
VPS54-201ENST00000272322 DAB2P98082 770 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 CLEC12AQ5QGZ9 265 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 RNF165Q6ZSG1 346 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 GALNT13Q8IUC8 556 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 UBE2J2Q8N2K1 259 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 METTL4Q8N3J2 472 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 TCEANCQ8N8B7 351 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 POC5Q8NA72 575 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 KXD1Q9BQD3 176 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 RPP25Q9BUL9 199 aaKnown RBP15.81■□□□□ 0.12
VPS54-201ENST00000272322 SGPP1Q9BX95 441 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 ANGPT4Q9Y264 503 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 GPR52Q9Y2T5 361 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 CLCA1A8K7I4 914 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 RFX3P48380 749 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 ELP6Q0PNE2 266 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 MAP4K2Q12851 820 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 HDDC3Q8N4P3 179 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 FRMD1Q8N878 549 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 STARD8Q92502 1023 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 MVB12BQ9H7P6 319 aa15.81■□□□□ 0.12
VPS54-201ENST00000272322 CACNA1CQ13936 2221 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 PGRMC2O15173 223 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 PDPK1O15530 556 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 ENTPD6O75354 484 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 PAPLNO95428 1278 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 HSD3B1P14060 373 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 CD72P21854 359 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 HSD3B2P26439 372 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 CCT3P49368 545 aaKnown RBP15.8■□□□□ 0.12
VPS54-201ENST00000272322 NKX2-5P52952 324 aaPredicted RBP15.8■□□□□ 0.12
VPS54-201ENST00000272322 INAVAQ3KP66 663 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 KHDRBS2Q5VWX1 349 aaKnown RBP15.8■□□□□ 0.12
VPS54-201ENST00000272322 COMTD1Q86VU5 262 aa15.8■□□□□ 0.12
VPS54-201ENST00000272322 NLRP8Q86W28 1048 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms