RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LIPJQ5W064 366 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 PITX2Q99697 317 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 CCL26Q9Y258 94 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 HCN4Q9Y3Q4 1203 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 TRBV4-1A0A0J9YWV2 114 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 ISPDA4D126 451 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 GPX5O75715 221 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 IFNW1P05000 195 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 CD83Q01151 205 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 FCHO2Q0JRZ9 810 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 TRIM40Q6P9F5 258 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 FAM131AQ6UXB0 335 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 CASP12Q6UXS9 341 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 CEACAM20Q6UY09 585 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 DDX53Q86TM3 631 aaKnown RBP14.59□□□□□ -0.07
UPF1-204ENST00000596842 WDR20Q8TBZ3 569 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 INSL5Q9Y5Q6 135 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 FADS2P1A8MWK0 482 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 SGTAO43765 313 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 ALPPL2P10696 532 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 LRRC26Q2I0M4 334 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 TYW3Q6IPR3 259 aaKnown RBP14.59□□□□□ -0.07
UPF1-204ENST00000596842 TMPRSS11AQ6ZMR5 421 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 GALNT13Q8IUC8 556 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 ZFP41Q8N8Y5 198 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 C7orf57Q8NEG2 295 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 ZNF224Q9NZL3 707 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 TRPC4Q9UBN4 977 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 MUTYHQ9UIF7 546 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 PLXNA4Q9HCM2 1894 aa14.59□□□□□ -0.07
UPF1-204ENST00000596842 LEFTY1O75610 366 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 IL3P08700 152 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 IMPA1P29218 277 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 RPS19P39019 145 aaKnown RBP14.58□□□□□ -0.07
UPF1-204ENST00000596842 CAV3P56539 151 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 TBPL1P62380 186 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 GGTA1PQ4G0N0 100 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 MPPE1Q53F39 396 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 GAREM2Q75VX8 874 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 SHFQ7M4L6 423 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 C16orf62Q7Z3J2 963 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 ADCK2Q7Z695 626 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 CHCHD4Q8N4Q1 142 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 YIPF4Q9BSR8 244 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 EMILIN2Q9BXX0 1053 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 HOXD1Q9GZZ0 328 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 GPBP1L1Q9HC44 474 aaPredicted RBP14.58□□□□□ -0.07
UPF1-204ENST00000596842 DYRK1BQ9Y463 629 aa14.58□□□□□ -0.07
UPF1-204ENST00000596842 CA12O43570 354 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 PCGF2P35227 344 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 OLR1P78380 273 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 TARDBPQ13148 414 aaKnown RBP eCLIP14.58□□□□□ -0.08
UPF1-204ENST00000596842 DOC2BQ14184 412 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 ZNF783Q6ZMS7 281 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 PCNPQ8WW12 178 aaKnown RBP14.58□□□□□ -0.08
UPF1-204ENST00000596842 EXOSC8Q96B26 276 aaKnown RBP14.58□□□□□ -0.08
UPF1-204ENST00000596842 REEP4Q9H6H4 257 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 DYRK4Q9NR20 520 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 CDRT1O95170 752 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 POP4O95707 220 aaKnown RBP14.58□□□□□ -0.08
UPF1-204ENST00000596842 GSTM1P09488 218 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 ZNF8P17098 575 aaPredicted RBP14.58□□□□□ -0.08
UPF1-204ENST00000596842 CSNK2BP67870 215 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 ZNF763Q0D2J5 394 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 CNTN1Q12860 1018 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 GDPD4Q6W3E5 623 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 CBARPQ8N350 705 aaPredicted RBP14.58□□□□□ -0.08
UPF1-204ENST00000596842 AP2M1Q96CW1 435 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 TXNDC15Q96J42 360 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 SPNS1Q9H2V7 528 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 ZDHHC4Q9NPG8 344 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 CFL2Q9Y281 166 aa14.58□□□□□ -0.08
UPF1-204ENST00000596842 GFYI3L273 518 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 I3L521 148 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 NRG2O14511 850 aaPredicted RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 TLX2O43763 284 aaPredicted RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 PTTG1O95997 202 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 ITGA2P17301 1181 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 BMPR1AP36894 532 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 TMIGD1Q6UXZ0 262 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 PLEKHM3Q6ZWE6 761 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 PIP5K1AQ99755 562 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 CTRCQ99895 268 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 GABARAPL3Q9BY60 117 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 ABCG4Q9H172 646 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 ACER3Q9NUN7 267 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 SPG21Q9NZD8 308 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 CORO2BQ9UQ03 480 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 PADI2Q9Y2J8 665 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 PLXNA3P51805 1871 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 TLR4O00206 839 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 PLK4O00444 970 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 MYL12BO14950 172 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 CLEC2LP0C7M8 214 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 PPIBP23284 216 aaKnown RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 PSMA1P25786 263 aaKnown RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 CRISP1P54107 249 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 MANFP55145 182 aaKnown RBP14.57□□□□□ -0.08
UPF1-204ENST00000596842 GPNMBQ14956 572 aa14.57□□□□□ -0.08
UPF1-204ENST00000596842 TCEA2Q15560 299 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms