RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 TMEM80Q96HE8 168 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 TRAF4Q9BUZ4 470 aaPredicted RBP9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ABCG5Q9H222 651 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 POPDC3Q9HBV1 291 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 SLAMF7Q9NQ25 335 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 V9GYH0 126 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 GSAPA4D1B5 854 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 CHURC1-FNTBB4DL54 471 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 GADD45GO95257 159 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ALDH1A1P00352 501 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 APOC3P02656 99 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 SLC11A1P49279 550 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 PER3P56645 1201 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 AANATQ16613 207 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 MS4A13Q5J8X5 152 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 TEX261Q6UWH6 196 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 SUSD1Q6UWL2 747 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ANKS3Q6ZW76 656 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 PRSS42Q7Z5A4 293 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 MSRB3Q8IXL7 192 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 C10orf111Q8N326 155 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 ZFP41Q8N8Y5 198 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 C11orf65Q8NCR3 313 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 MND1Q9BWT6 205 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 KCNN2Q9H2S1 579 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 FOLH1BQ9HBA9 442 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 BRD7Q9NPI1 651 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 FZD4Q9ULV1 537 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 U3KQ87 197 aa9.18□□□□□ -0.94
CCDC40-212ENST00000574799 GNG14A0A1W2PPG7 69 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TLR4O00206 839 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 PROM1O43490 865 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 MPZL2O60487 215 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HCN1O60741 890 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HPGDSO60760 199 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 B3GALNT1O75752 331 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HRGP04196 525 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 ATP12AP54707 1039 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 MLLT6P55198 1093 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 MAZP56270 477 aaKnown RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 RAB8AP61006 207 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 DEFA5Q01523 94 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 EFEMP1Q12805 493 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 NOGQ13253 232 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 IFI44LQ53G44 452 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 PDZD3Q86UT5 571 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 DBF4BQ8NFT6 615 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 OR4M1Q8NGD0 313 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 RBPMSQ93062 196 aaKnown RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 ERMAPQ96PL5 475 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 CINPQ9BW66 212 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 PIGUQ9H490 435 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TPT1P8Q9HAU6 139 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 PCDHB16Q9NRJ7 776 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 ABCC13Q9NSE7 274 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 NUDT15Q9NV35 164 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 RLIMQ9NVW2 624 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 ARL15Q9NXU5 204 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TVP23BQ9NYZ1 205 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 C5orf58C9J3I9 102 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 NAGAP17050 411 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TEKQ02763 1124 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 UAP1L1Q3KQV9 507 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 ATAT1Q5SQI0 421 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TCEANCQ8N8B7 351 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 DNAJB8Q8NHS0 232 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 FBLIM1Q8WUP2 373 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 COQ10AQ96MF6 247 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 NELL2Q99435 816 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 NIPSNAP1Q9BPW8 284 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 C1QTNF6Q9BXI9 259 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 MLXQ9UH92 298 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 ACTL7AQ9Y615 435 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 PLXNB3Q9ULL4 1909 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 DOCK6Q96HP0 2047 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 NOTCH4Q99466 2003 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 MGAT4DA6NG13 374 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 H3BNC9 293 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TOR1AO14656 332 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 RPLP2P05387 115 aaKnown RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HIST1H2AGP0C0S8 130 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HIST1H2ADP20671 130 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TPMTP51580 245 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HK3P52790 923 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 VSX2P58304 361 aaPredicted RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 ERVFC1P60507 584 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 TIAL1Q01085 375 aaKnown RBP eCLIP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 PTGES3Q15185 160 aaKnown RBP9.17□□□□□ -0.94
CCDC40-212ENST00000574799 RNF180Q86T96 592 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 BEST4Q8NFU0 473 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 COQ8AQ8NI60 647 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 WBP2Q969T9 261 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HIST1H2AHQ96KK5 128 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 C1orf74Q96LT6 269 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 HIST1H2AJQ99878 128 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 H2AFJQ9BTM1 129 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 NLNQ9BYT8 704 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 GABARAPL1Q9H0R8 117 aa9.17□□□□□ -0.94
CCDC40-212ENST00000574799 SPNS1Q9H2V7 528 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms