RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RPS26P62854 115 aaKnown RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 CDC42EP1Q00587 391 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 VEZF1Q14119 521 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SEC23BQ15437 767 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 CHRNA6Q15825 494 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 GPRC6AQ5T6X5 926 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 FRG2Q64ET8 278 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 TYW3Q6IPR3 259 aaKnown RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 C16orf62Q7Z3J2 963 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 TLK2Q86UE8 772 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 COMMD7Q86VX2 200 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 RBM45Q8IUH3 476 aaKnown RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 FAM181AQ8N9Y4 354 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 GPRC5AQ8NFJ5 357 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 KLHL6Q8WZ60 621 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 TM9SF4Q92544 642 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 FAM193BQ96PV7 902 aaPredicted RBP11.19□□□□□ -0.62
CPSF3-202ENST00000460593 FRG2BQ96QU4 278 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 ADGRE3Q9BY15 652 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 IL26Q9NPH9 171 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 FLRT1Q9NZU1 646 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 CRLS1Q9UJA2 301 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 MAPRE3Q9UPY8 281 aa11.19□□□□□ -0.62
CPSF3-202ENST00000460593 SHISA3A0PJX4 238 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 CA12O43570 354 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 TLX2O43763 284 aaPredicted RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 MTX2O75431 263 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 PDE9AO76083 593 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 PAHP00439 452 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 PER3P56645 1201 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 SCARB2Q14108 478 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 SPRYD7Q5W111 196 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 IL20RBQ6UXL0 311 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 UNC5DQ6UXZ4 953 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 UBE2R2Q712K3 238 aaPredicted RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 GHDCQ8N2G8 530 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 C1orf52Q8N6N3 182 aaKnown RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF431Q8TF32 576 aaPredicted RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 RIT1Q92963 219 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 SENP5Q96HI0 755 aaPredicted RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 SEPT5Q99719 369 aaPredicted RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 WFDC6Q9BQY6 131 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 TINF2Q9BSI4 451 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 GTPBP2Q9BX10 602 aaKnown RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 BEX1Q9HBH7 125 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 GOLGA4Q13439 2230 aaKnown RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 A0A0A6YYJ9 748 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 C1orf226A1L170 272 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 C17orf102A2RUQ5 167 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 GSAPA4D1B5 854 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 HEPACAM2A8MVW5 462 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 FFAR1O14842 300 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 NAGAP17050 411 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 CD52P31358 61 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 GJA5P36382 358 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 HBA1P69905 142 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 BNC1Q01954 994 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 BOP1Q14137 746 aaKnown RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 LRRC73Q5JTD7 316 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 CPTPQ5TA50 214 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 RNF219Q5W0B1 726 aaPredicted RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 FAM46DQ8NEK8 389 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 CEP76Q8TAP6 659 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 POF1BQ8WVV4 589 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 MSLNLQ96KJ4 702 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 SAMD11Q96NU1 681 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 ANKRA2Q9H9E1 313 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 SLC25A19Q9HC21 320 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 CTPS2Q9NRF8 586 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 B3GNT2Q9NY97 397 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 CNOT2Q9NZN8 540 aaKnown RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 PRRC2BQ5JSZ5 2229 aaKnown RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 C2orf92A0A1B0GVN3 265 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 TRBC2A0A5B9 178 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 CASKO14936 926 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 C6orf47O95873 294 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 HRGP04196 525 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 RHOCP08134 193 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 FAM157BP0CG42 384 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 PRKAR1AP10644 381 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 ATF6P18850 670 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 PXNP49023 591 aaPredicted RBP11.18□□□□□ -0.62
CPSF3-202ENST00000460593 RHAGQ02094 409 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 RPA4Q13156 261 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 ALG1LQ6GMV1 187 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 TEX261Q6UWH6 196 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 TSPAN33Q86UF1 283 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 ZNF280BQ86YH2 543 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 LIX1LQ8IVB5 337 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 NANOGP1Q8N7R0 232 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.18□□□□□ -0.626e-6■■■□□ 15.1
CPSF3-202ENST00000460593 MS4A3Q96HJ5 214 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 GKN1Q9NS71 199 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 U3KQ87 197 aa11.18□□□□□ -0.62
CPSF3-202ENST00000460593 GNG14A0A1W2PPG7 69 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 PDPK1O15530 556 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 BNIP3LO60238 219 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 TOXO94900 526 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 ACADMP11310 421 aa11.17□□□□□ -0.62
CPSF3-202ENST00000460593 CXCL3P19876 107 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms