RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 DEPDC7Q96QD5 511 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 RANGRFQ9HD47 186 aaPredicted RBP13.39□□□□□ -0.27
USH1C-201ENST00000005226 ABCB9Q9NP78 766 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 THSD1Q9NS62 852 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 TMEM98Q9Y2Y6 226 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 PCM1Q15154 2024 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 EIF3FO00303 357 aaPredicted RBP13.39□□□□□ -0.27
USH1C-201ENST00000005226 SLCO2B1O94956 709 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 GSTM1P09488 218 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 FURINP09958 794 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 ITGA2P17301 1181 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 CST5P28325 142 aaPredicted RBP13.39□□□□□ -0.27
USH1C-201ENST00000005226 GABRR2P28476 465 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 CAV3P56539 151 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 C21orf58P58505 322 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 HOXC5Q00444 222 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 GPR162Q16538 588 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 C11orf74Q86VG3 221 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 GLCCI1Q86VQ1 547 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 LAS2Q8IYD9 372 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 C9orf43Q8TAL5 461 aaPredicted RBP13.39□□□□□ -0.27
USH1C-201ENST00000005226 C16orf78Q8WTQ4 265 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 SORCS1Q8WY21 1168 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 TMEM159Q96B96 161 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 ZFYVE19Q96K21 471 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 NECTIN4Q96NY8 510 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 OR2B2Q9GZK3 357 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 POLR2J2Q9GZM3 115 aaKnown RBP13.39□□□□□ -0.27
USH1C-201ENST00000005226 ABCG4Q9H172 646 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 CCDC177Q9NQR7 707 aaPredicted RBP13.39□□□□□ -0.27
USH1C-201ENST00000005226 STARD7Q9NQZ5 370 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 C5AR2Q9P296 337 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 CARD8Q9Y2G2 431 aa13.39□□□□□ -0.27
USH1C-201ENST00000005226 A0A1W2PRB8 838 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 NPC1O15118 1278 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 UGDHO60701 494 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 PSIP1O75475 530 aaKnown RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 SCG5P05408 212 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 TNNI3P19429 210 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 ATN1P54259 1190 aaPredicted RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 ZNF763Q0D2J5 394 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 TIMM50Q3ZCQ8 353 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 SPIN4Q56A73 249 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 SPOUT1Q5T280 376 aaKnown RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 ZNF770Q6IQ21 691 aaPredicted RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 MED27Q6P2C8 311 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 CAMKMTQ7Z624 323 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 ASCC1Q8N9N2 400 aaKnown RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 FAM46DQ8NEK8 389 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 SLC6A18Q96N87 628 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 MAPKAP1Q9BPZ7 522 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 CCDC32Q9BV29 185 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 BHLHE41Q9C0J9 482 aaPredicted RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 LINC00597Q9H2U6 94 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 ELAC1Q9H777 363 aaKnown RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 IL21Q9HBE4 155 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 REV1Q9UBZ9 1251 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 TMA7Q9Y2S6 64 aaKnown RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 LSM2Q9Y333 95 aaKnown RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 A0A1W2PQ45 241 aaPredicted RBP13.38□□□□□ -0.27
USH1C-201ENST00000005226 A0A1W2PQY0 241 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 OR10H3O60404 316 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 GPR37L1O60883 481 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 IFNW1P05000 195 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 IL3P08700 152 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 CA8P35219 290 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 PTPN5P54829 565 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 TRIM40Q6P9F5 258 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 FAM131AQ6UXB0 335 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.38□□□□□ -0.27
USH1C-201ENST00000005226 DEF8Q6ZN54 512 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 GAREM2Q75VX8 874 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 OR9Q1Q8NGQ5 310 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 FIBINQ8TAL6 211 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.38□□□□□ -0.27
USH1C-201ENST00000005226 ZNF480Q8WV37 535 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 BRF2Q9HAW0 419 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 SLC25A19Q9HC21 320 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 ATP6V1HQ9UI12 483 aa13.38□□□□□ -0.27
USH1C-201ENST00000005226 ZNF106Q9H2Y7 1883 aaKnown RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 A0A075B6Q4 140 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 AP2A2O94973 939 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 BCHEP06276 602 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 RORCP51449 518 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 HMGA2P52926 109 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 CD83Q01151 205 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 FLYWCH1Q4VC44 716 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 CRB2Q5IJ48 1285 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 C22orf42Q6IC83 251 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 DEFB128Q7Z7B8 93 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 ZNF366Q8N895 744 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 FLCNQ8NFG4 579 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 OR4D11Q8NGI4 311 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 UBASH3BQ8TF42 649 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 TMCO6Q96DC7 493 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 OTUB1Q96FW1 271 aaPredicted RBP13.37□□□□□ -0.27
USH1C-201ENST00000005226 IGSF21Q96ID5 467 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 SLC6A16Q9GZN6 736 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 SRRQ9GZT4 340 aa13.37□□□□□ -0.27
USH1C-201ENST00000005226 CXorf36Q9H7Y0 433 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms