RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PCYT2Q99447 389 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 POLR3CQ9BUI4 534 aaPredicted RBP3.55□□□□□ -1.84
CD44-235ENST00000532339 RBM4Q9BWF3 364 aaKnown RBP3.55□□□□□ -1.84
CD44-235ENST00000532339 FAM118AQ9NWS6 357 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 B3GALT5Q9Y2C3 310 aa3.55□□□□□ -1.84
CD44-235ENST00000532339 BAZ2BQ9UIF8 2168 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 EDDM13A0A1B0GTR0 161 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 A0A1W2PPM1 405 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ANTXRLA6NF34 631 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ANKRD28O15084 1053 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 KCNN4O15554 427 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 CSO75390 466 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 PRAMEF12O95522 483 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 MUTP22033 750 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ACP1P24666 158 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 DNASE1P24855 282 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ITGA3P26006 1051 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 RBMXP38159 391 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 GP5P40197 560 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 LEPRP48357 1165 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 NOVP48745 357 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 HOXA1P49639 335 aaPredicted RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 CLDN20P56880 219 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 EEF1A1P68104 462 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 PDE1BQ01064 536 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 BFSP1Q12934 665 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 WDR43Q15061 677 aaKnown RBP eCLIP3.54□□□□□ -1.84
CD44-235ENST00000532339 PDGFRLQ15198 375 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 FCN2Q15485 313 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 CDC37Q16543 378 aaPredicted RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 MEP1AQ16819 746 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 KRTCAP3Q53RY4 240 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 CCNYL2Q5T2Q4 361 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 C6orf163Q5TEZ5 329 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 EEF1A1P5Q5VTE0 462 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 C18orf63Q68DL7 685 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 KCTD8Q6ZWB6 473 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ZNF534Q76KX8 674 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 IQCHQ86VS3 1027 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 TGIF2LYQ8IUE0 185 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 OR8H3Q8N146 312 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ALLCQ8N6M5 410 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 METTL13Q8N6R0 699 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 TSPAN14Q8NG11 270 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ZNF461Q8TAF7 563 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 FAM76AQ8TAV0 307 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 HMGCLL1Q8TB92 370 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 WDR20Q8TBZ3 569 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 SIPA1Q96FS4 1042 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 CDHR1Q96JP9 859 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 JAKMIP1Q96N16 626 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 SLC22A12Q96S37 553 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 SMC6Q96SB8 1091 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ABHD6Q9BV23 337 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 SLC25A23Q9BV35 468 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 BARHL1Q9BZE3 327 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 LRRCC1Q9C099 1032 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 RAD21L1Q9H4I0 556 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 CNOT10Q9H9A5 744 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 DDX43Q9NXZ2 648 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 MTRRQ9UBK8 725 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 DDX25Q9UHL0 483 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 SATB2Q9UPW6 733 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 PIN4Q9Y237 131 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 LOXL2Q9Y4K0 774 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 ZFC3H1O60293 1989 aaKnown RBP3.54□□□□□ -1.84
CD44-235ENST00000532339 DCHS2Q6V1P9 2916 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 KIAA1549LQ6ZVL6 1849 aa3.54□□□□□ -1.84
CD44-235ENST00000532339 EPPK1P58107 5090 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 PTPRCP08575 1304 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 CEP192Q8TEP8 1941 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 A0A1B0GTQ1 180 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 A0A1W2PP11 408 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 FEZF1A0PJY2 475 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 RNF212BA8MTL3 300 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 J3QR06 171 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 HS3ST1O14792 307 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 NDUFS4O43181 175 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 SLC7A4O43246 635 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 WDR1O75083 606 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 KLF8O95600 359 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 PDHBP11177 359 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 MYOD1P15172 320 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 GABRG2P18507 467 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 KLK2P20151 261 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 TMOD1P28289 359 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 CORO1AP31146 461 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 TLX1P31314 330 aaPredicted RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 MATR3P43243 847 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-235ENST00000532339 CSNK1EP49674 416 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 NPY4RP50391 375 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 RAB28P51157 221 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 GPC3P51654 580 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 HNRNPKP61978 463 aaKnown RBP eCLIP3.53□□□□□ -1.84
CD44-235ENST00000532339 IL9RQ01113 521 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 RUNX1T1Q06455 604 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 ELAVL2Q12926 359 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 SRSF6Q13247 344 aaKnown RBP3.53□□□□□ -1.84
CD44-235ENST00000532339 TGIF1Q15583 401 aa3.53□□□□□ -1.84
CD44-235ENST00000532339 TMEM30BQ3MIR4 351 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms