RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	IDH3B	O43837	385 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	XPNPEP2	O43895	674 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	CPNE3	O75131	537 aa	Known RBP	13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	OC90	Q02509	493 aa	Predicted RBP	13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	AAK1	Q2M2I8	961 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	LCN1P1	Q5VSP4	162 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	KCNS3	Q9BQ31	491 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	GPRC5B	Q9NZH0	403 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	C1orf226	A1L170	272 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	OR52A4P	A6NMU1	304 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	SLC22A1	O15245	554 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	GABBR2	O75899	941 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	INHBC	P55103	352 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	PPP2R2B	Q00005	443 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	CARTPT	Q16568	116 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	LCN8	Q6JVE9	175 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	FAM180A	Q6UWF9	173 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	ATCAY	Q86WG3	371 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	RASGRP3	Q8IV61	690 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	TEX26	Q8N6G2	289 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	PLA2G15	Q8NCC3	412 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	DOK4	Q8TEW6	326 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	RNF31	Q96EP0	1072 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	DTD2	Q96FN9	168 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	LIN28A	Q9H9Z2	209 aa	Known RBP	13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	DNAJC27	Q9NZQ0	273 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	COMMD3	Q9UBI1	195 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	TNFRSF10D	Q9UBN6	386 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	CCL26	Q9Y258	94 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	PCDHGA7	Q9Y5G6	932 aa		13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	GPC6	Q9Y625	555 aa	Predicted RBP	13.63	□□□□□ -0.23
NPHP4-208	ENST00000478423	MROH6	A6NGR9	719 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	WWP2	O00308	870 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	TBX1	O43435	398 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	NUAK1	O60285	661 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	SEMA4F	O95754	770 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	SGSH	P51688	502 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	TRAM2	Q15035	370 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	SLC14A2	Q15849	920 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	NUP43	Q8NFH3	380 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	UBXN10	Q96LJ8	280 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	MYRFL	Q96LU7	910 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	PTCHD1	Q96NR3	888 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	FAM129B	Q96TA1	746 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	DCSTAMP	Q9H295	470 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	LAMB1	P07942	1786 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	IFI30	P13284	250 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	AGXT	P21549	392 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	HOXC13	P31276	330 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	CSNK1D	P48730	415 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	CDH11	P55287	796 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	TUBA4A	P68366	448 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	RPA4	Q13156	261 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	TLR1	Q15399	786 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	GRHL2	Q6ISB3	625 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	DUS1L	Q6P1R4	473 aa	Known RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	DPPA4	Q7L190	304 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	VTCN1	Q7Z7D3	282 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	ERI1	Q8IV48	349 aa	Known RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	MCEMP1	Q8IX19	187 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	KLHDC8A	Q8IYD2	350 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	CAPSL	Q8WWF8	208 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	C5AR2	Q9P296	337 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	PCDHB14	Q9Y5E9	798 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	SCAMP2	O15127	329 aa	Known RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	INMT	O95050	263 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	ECD	O95905	644 aa	Predicted RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	CD2	P06729	351 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	SLC6A11	P48066	632 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	IST1	P53990	364 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	MLLT1	Q03111	559 aa	Predicted RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	SCN1B	Q07699	218 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	LRRC26	Q2I0M4	334 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	FBXO43	Q4G163	708 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	PEG10	Q86TG7	708 aa	Known RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	LRRC17	Q8N6Y2	441 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZNF483	Q8TF39	744 aa	Predicted RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	NEIL2	Q969S2	332 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	CAPN14	A8MX76	684 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	TLX3	O43711	291 aa	Predicted RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZNF821	O75541	412 aa	Predicted RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	WBP4	O75554	376 aa	Known RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	FH	P07954	510 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	IL1RN	P18510	177 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	COLEC12	Q5KU26	742 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	LIN54	Q6MZP7	749 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	OR4N5	Q8IXE1	308 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	PHF12	Q96QT6	1004 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	CDCA3	Q99618	268 aa	Predicted RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	C8orf33	Q9H7E9	229 aa	Predicted RBP	13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	RDH14	Q9HBH5	336 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	MGAT4B	Q9UQ53	548 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	HS3ST2	Q9Y278	367 aa		13.62	□□□□□ -0.23
NPHP4-208	ENST00000478423	MAN2B1	O00754	1011 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	KHNYN	O15037	678 aa	Known RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	LILRB3	O75022	631 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ABCB7	O75027	752 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	DHFR	P00374	187 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms