RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 SLC35A2P78381 396 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 SRSF11Q05519 484 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 DUSP7Q16829 419 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 MPPE1Q53F39 396 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 MPP7Q5T2T1 576 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 GCNT6Q5T4J0 391 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 RTL10Q7L3V2 364 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 ARMC8Q8IUR7 673 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 B3GNT7Q8NFL0 401 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 MYDGFQ969H8 173 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 MTERF3Q96E29 417 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 FAM210AQ96ND0 272 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 TUBA1CQ9BQE3 449 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 POLR2J2Q9GZM3 115 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 MMP28Q9H239 520 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 IMP3Q9NV31 184 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 SLC13A4Q9UKG4 626 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 ZNF106Q9H2Y7 1883 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 FAM220BPB1ANY3 271 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 ZNF821O75541 412 aaPredicted RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 NTN1O95631 604 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 POP4O95707 220 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 PABPC1P11940 636 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 MAT2AP31153 395 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 HOXA9P31269 272 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 SOX6P35712 828 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 CD83Q01151 205 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 GPR33Q49SQ1 333 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 IFI44LQ53G44 452 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 ASTLQ6HA08 431 aaPredicted RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 MED27Q6P2C8 311 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 TMIGD1Q6UXZ0 262 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 COMMD6Q7Z4G1 85 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 C12orf76Q8N812 135 aaPredicted RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 ASB11Q8WXH4 323 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 GGHQ92820 318 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 FKBP10Q96AY3 582 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 TRNT1Q96Q11 434 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 NTMT1Q9BV86 223 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 YIPF2Q9BWQ6 316 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 TBC1D17Q9HA65 648 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 SEMA3GQ9NS98 782 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 STOX2Q9P2F5 926 aaPredicted RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 PRAMEF33A0A0G2JMD5 474 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 H3BSH0 61 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 AQP9O43315 295 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 PRAMEF10O60809 474 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 RETP07949 1114 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 NR2F1P10589 423 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 PFN3P60673 137 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 TUBA3CQ13748 450 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 ZMAT1Q5H9K5 638 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 SMARCD3Q6STE5 483 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 PTOV1Q86YD1 416 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 MGLLQ99685 303 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 SPNS1Q9H2V7 528 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 GPN2Q9H9Y4 310 aaPredicted RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 SEC14L3Q9UDX4 400 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 KLHL3Q9UH77 587 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 MRPS7Q9Y2R9 242 aaKnown RBP12.8□□□□□ -0.36
USP42-203ENST00000426246 RWDD3Q9Y3V2 267 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 PCDHB11Q9Y5F2 797 aa12.8□□□□□ -0.36
USP42-203ENST00000426246 SPAG17Q6Q759 2223 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 M0R3H8 397 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 SULT1C4O75897 302 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 PAPLNO95428 1278 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 CCDC159P0C7I6 412 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 FNDC3BQ53EP0 1204 aaKnown RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 FAM131AQ6UXB0 335 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 CYP4Z2PQ8N1L4 340 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 S100ZQ8WXG8 99 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 ZNF707Q96C28 371 aaPredicted RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 NLNQ9BYT8 704 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 TM7SF3Q9NS93 570 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 CDH7Q9ULB5 785 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 YARS2Q9Y2Z4 477 aaKnown RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 ZW10O43264 779 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 RPLP0P05388 317 aaKnown RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 RHOP08100 348 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 POLR2LP62875 67 aaKnown RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 ATAD3BQ5T9A4 648 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 RASGEF1AQ8N9B8 481 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 OR6Q1Q8NGQ2 317 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 CITED4Q96RK1 184 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 FBXW2Q9UKT8 454 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 BRWD1Q9NSI6 2320 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 FADS2P1A8MWK0 482 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 MYL12BO14950 172 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 ATG13O75143 517 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 WBP4O75554 376 aaKnown RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 ITIH1P19827 911 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 HOXD12P35452 270 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 PIK3CBP42338 1070 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 GPAT3Q53EU6 434 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 TRIM46Q7Z4K8 759 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 MMAAQ8IVH4 418 aaKnown RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 RBM12BQ8IXT5 1001 aaKnown RBP12.79□□□□□ -0.36
USP42-203ENST00000426246 UCN3Q969E3 161 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 SLC38A4Q969I6 547 aa12.79□□□□□ -0.36
USP42-203ENST00000426246 DNAJA3Q96EY1 480 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms