RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CCL16O15467 120 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 SGTAO43765 313 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 OR10H3O60404 316 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 LRG1P02750 347 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 SOD2P04179 222 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 SERPIND1P05546 499 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 MPC1LP0DKB6 136 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 TBPL1P62380 186 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 TEAD4Q15561 434 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 LRIT3Q3SXY7 679 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 DEPDC4Q8N2C3 294 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 SPATA7Q9P0W8 599 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 BOLA1Q9Y3E2 137 aa11.62□□□□□ -0.55
CLIP3-201ENST00000360535 A0A1W2PRB8 838 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 EFCAB10A6NFE3 127 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 PLK4O00444 970 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 KPNA3O00505 521 aaPredicted RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ARHGAP33O14559 1287 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 BCHEP06276 602 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 UGT2B15P54855 530 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 TMEM115Q12893 351 aaPredicted RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 HSPB3Q12988 150 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 GRIN2CQ14957 1233 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 BCL7AQ4VC05 210 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 GRHL2Q6ISB3 625 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 PAQR6Q6TCH4 344 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 CACUL1Q86Y37 369 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 RBM45Q8IUH3 476 aaKnown RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 IQCF1Q8N6M8 205 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 AP2M1Q96CW1 435 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 NEDD4LQ96PU5 975 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 GABARAPL3Q9BY60 117 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 TP63Q9H3D4 680 aaPredicted RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 REEP4Q9H6H4 257 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 NMNAT1Q9HAN9 279 aaPredicted RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 STOML2Q9UJZ1 356 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 PADI2Q9Y2J8 665 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 TRBV4-1A0A0J9YWV2 114 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 KMOO15229 486 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 PRMT3O60678 531 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ENTPD6O75354 484 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 IL3P08700 152 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 PRPH2P23942 346 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 CHMP24386 653 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 DEFA1P59665 94 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 DEFA3P59666 94 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 POLR2LP62875 67 aaKnown RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 NKX3-2P78367 333 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 MRPS15P82914 257 aaKnown RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF763Q0D2J5 394 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 PRSS53Q2L4Q9 553 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF181Q2M3W8 571 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 RNF165Q6ZSG1 346 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 DDX53Q86TM3 631 aaKnown RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF480Q8WV37 535 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 EMILIN2Q9BXX0 1053 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 BEX2Q9BXY8 128 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 SLC46A2Q9BY10 475 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ABCG4Q9H172 646 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 HMX1Q9NP08 348 aaPredicted RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ACER3Q9NUN7 267 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 CLN6Q9NWW5 311 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 HCN4Q9Y3Q4 1203 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 LRRTM2O43300 516 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 GSTM1P09488 218 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 HOXB6P17509 224 aaKnown RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 DMPKQ09013 629 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 SPDYE7PQ495Y7 208 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 TPGS2Q68CL5 300 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 CEACAM20Q6UY09 585 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 MSANTD1Q6ZTZ1 278 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 CHTF18Q8WVB6 975 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 TRMT2BQ96GJ1 504 aaKnown RBP11.61□□□□□ -0.55
CLIP3-201ENST00000360535 ASPNQ9BXN1 380 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 OR2AG1Q9H205 316 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 NEK6Q9HC98 313 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 CPNE5Q9HCH3 593 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 DYRK1BQ9Y463 629 aa11.61□□□□□ -0.55
CLIP3-201ENST00000360535 A0A0C4DFX4 3053 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 PLXND1Q9Y4D7 1925 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 TRAV19A0A0A6YYK7 116 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 SAGE2PA6NJ88 616 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 ATG13O75143 517 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 FHP07954 510 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 CASP3P42574 277 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 CSNK2BP67870 215 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 ARMC4Q5T2S8 1044 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 PNCKQ6P2M8 343 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 TRIM40Q6P9F5 258 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 WDR53Q7Z5U6 358 aaPredicted RBP11.6□□□□□ -0.55
CLIP3-201ENST00000360535 OR2A12Q8NGT7 310 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 TBC1D20Q96BZ9 403 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 TRNT1Q96Q11 434 aaKnown RBP11.6□□□□□ -0.55
CLIP3-201ENST00000360535 ZDHHC4Q9NPG8 344 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 BTNL2Q9UIR0 455 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 CORO2BQ9UQ03 480 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 DNMT3AQ9Y6K1 912 aaPredicted RBP11.6□□□□□ -0.55
CLIP3-201ENST00000360535 XIRP2A4UGR9 3374 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 IGLV3-16A0A075B6K0 115 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms