RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MMP28Q9H239 520 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 RETREG1Q9H6L5 497 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 SLC6A13Q9NSD5 602 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 H2AFY2Q9P0M6 372 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 TRAV20A0A0B4J274 112 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 GSAPA4D1B5 854 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 JRKO75564 520 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 GADD45GO95257 159 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 URODP06132 367 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 PTGER1P34995 402 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 NSG1P42857 185 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 BDKRB1P46663 353 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 MAB21L1Q13394 359 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 NFE2L1Q14494 772 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 XKR4Q5GH76 650 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 Q6ZVU0 165 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 KIF18BQ86Y91 864 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 COLGALT2Q8IYK4 626 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 FAM83FQ8NEG4 500 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 COQ8AQ8NI60 647 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 ACPTQ9BZG2 426 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 EQTNQ9NQ60 294 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 KLHL1Q9NR64 748 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 RIMKLBQ9ULI2 386 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 PCDHGB3Q9Y5G1 929 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 TTLL8A6PVC2 850 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 TNFRSF10BO14763 440 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 B4GALT3O60512 393 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 INHAP05111 366 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ALPPL2P10696 532 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SELPP16109 830 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 HOXD9P28356 352 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 NUP62P37198 522 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 BUD31P41223 144 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 CASP3P42574 277 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 PPP5CP53041 499 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 NKX3-2P78367 333 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 CNTN1Q12860 1018 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ATP13A5Q4VNC0 1218 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ALG1LQ6GMV1 187 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SSX6Q7RTT6 188 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 TAS1R1Q7RTX1 841 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SLC5A8Q8N695 610 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 TM9SF2Q99805 663 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 DHRS9Q9BPW9 319 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 PRMT8Q9NR22 394 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 DCAF13Q9NV06 445 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SLC25A13Q9UJS0 675 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 HCN4Q9Y3Q4 1203 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ZFC3H1O60293 1989 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 CTDSP2O14595 271 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 MANFP55145 182 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 METTL2BQ6P1Q9 378 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ASB18Q6ZVZ8 466 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 DGLUCYQ7Z3D6 616 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 NOXA1Q86UR1 476 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ZZZ3Q8IYH5 903 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 CELF2-AS1Q8N7Q2 184 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ZNF675Q8TD23 568 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 METTL2AQ96IZ6 378 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 UHRF1Q96T88 793 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 NLNQ9BYT8 704 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SLC22A4Q9H015 551 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.49□□□□□ -0.572e-6■■■■□ 20
HMGB1-206ENST00000405805 MTG2Q9H4K7 406 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 CPNE5Q9HCH3 593 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 PLSCR3Q9NRY6 295 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 IL17CQ9P0M4 197 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SLCO3A1Q9UIG8 710 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 FHP07954 510 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 EBLN1P0CF75 366 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 C7P10643 843 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 PRKCAP17252 672 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 MYL12AP19105 171 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 FNTBP49356 437 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 GP2P55259 537 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SELENBP1Q13228 472 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SETMARQ53H47 684 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 AQP11Q8NBQ7 271 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 GATAD2BQ8WXI9 593 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SMG7Q92540 1137 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 SLC39A13Q96H72 371 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 FAM129BQ96TA1 746 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 RANGRFQ9HD47 186 aaPredicted RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 F5P12259 2224 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ARID1AO14497 2285 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 TCRBV5S2A0A599 114 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 STC2O76061 302 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 C6orf47O95873 294 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 EOMESO95936 686 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 C9P02748 559 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 PDGFAP04085 211 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 CLEC2LP0C7M8 214 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 UBL4AP11441 157 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 BPIP17213 487 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 PRPS1L1P21108 318 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 PSMA1P25786 263 aaKnown RBP11.49□□□□□ -0.57
HMGB1-206ENST00000405805 DUOXA1Q1HG43 343 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 CLEC12AQ5QGZ9 265 aa11.49□□□□□ -0.57
HMGB1-206ENST00000405805 ATAD3CQ5T2N8 411 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms