RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 HIST2H2ACQ16777 129 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 CCDC153Q494R4 210 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 PAGE2BQ5JRK9 111 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 CPZQ66K79 652 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 HIST2H2AA3Q6FI13 130 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 ABHD17CQ6PCB6 329 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 LRIG3Q6UXM1 1119 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 ZNF793Q6ZN11 406 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 ATG14Q6ZNE5 492 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MILR1Q7Z6M3 343 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 C10orf107Q8IVU9 208 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 TTLQ8NG68 377 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 OR51Q1Q8NH59 317 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 TCP10LQ8TDR4 215 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 ATP6V1E2Q96A05 226 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MIEF2Q96C03 454 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 FAM111AQ96PZ2 611 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MTERF1Q99551 399 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 C17orf62Q9BQA9 187 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 SORBS1Q9BX66 1292 aaKnown RBP13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 TRIM55Q9BYV6 548 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 TGIF2Q9GZN2 237 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 OR51B5Q9H339 312 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 TNFRSF12AQ9NP84 129 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 PRDM7Q9NQW5 492 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 OXSMQ9NWU1 459 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 ZNF282Q9UDV7 671 aaPredicted RBP13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MAP4K5Q9Y4K4 846 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 KCNMB2Q9Y691 235 aa13.44□□□□□ -0.26
SHKBP1-217ENST00000598558 MAGEB17A8MXT2 336 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 FAM227AF5H4B4 570 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 AGPSO00116 658 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 SOCS6O14544 535 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 RGS16O15492 202 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 ERI3O43414 337 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 UGDHO60701 494 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 ERLIN1O75477 346 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 OR4F21O95013 312 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 NAGLUP54802 743 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 RPS13P62277 151 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 CHAF1BQ13112 559 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 ATP1A4Q13733 1029 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 DDX39BQ13838 428 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 HERC3Q15034 1050 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 TCHHL1Q5QJ38 904 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 SLC22A9Q8IVM8 553 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 CCNYL1Q8N7R7 359 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 GAL3ST3Q96A11 431 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 PEX11GQ96HA9 241 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 SEC16BQ96JE7 1060 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 MECRQ9BV79 373 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 RBCK1Q9BYM8 510 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 REXO4Q9GZR2 422 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 MKKSQ9NPJ1 570 aaPredicted RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 DMRT3Q9NQL9 472 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 LANCL2Q9NS86 450 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 FARSBQ9NSD9 589 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 TSC22D4Q9Y3Q8 395 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 HS3ST3B1Q9Y662 390 aa13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 MDC1Q14676 2089 aaKnown RBP13.43□□□□□ -0.26
SHKBP1-217ENST00000598558 SEC16AO15027 2179 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 ALOX12BO75342 701 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 DNAJB5O75953 348 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 H2AFXP16104 143 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 GSTM2P28161 218 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 ALDH3A1P30838 453 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 ETV4P43268 484 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 XCR1P46094 333 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 DNAJB13P59910 316 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 STXBP1P61764 594 aaKnown RBP13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 OCA2Q04671 838 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 CASP8Q14790 479 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 RBBP7Q16576 425 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 DEPDC1Q5TB30 811 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 FAAH2Q6GMR7 532 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 KIRREL2Q6UWL6 708 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 ABHD13Q7L211 337 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 MRGPREQ86SM8 312 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 CA13Q8N1Q1 262 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 TMEM52Q8NDY8 209 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 MYRIPQ8NFW9 859 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 OR2L5Q8NG80 312 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 UBE2E3Q969T4 207 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 C8orf44Q96CB5 159 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 CRB3Q9BUF7 120 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 GATA5Q9BWX5 397 aaPredicted RBP13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 CENPHQ9H3R5 247 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 C3orf18Q9UK00 162 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 POLHQ9Y253 713 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 PADI2Q9Y2J8 665 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 PCDHGA11Q9Y5H2 935 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 NBEAQ8NFP9 2946 aa13.42□□□□□ -0.26
SHKBP1-217ENST00000598558 ARGFXA6NJG6 315 aa13.41□□□□□ -0.26
SHKBP1-217ENST00000598558 IDSB3KWA1 339 aa13.41□□□□□ -0.26
SHKBP1-217ENST00000598558 PRPF4O43172 522 aaKnown RBP eCLIP13.41□□□□□ -0.26
SHKBP1-217ENST00000598558 OTCP00480 354 aa13.41□□□□□ -0.26
SHKBP1-217ENST00000598558 ITGB2P05107 769 aa13.41□□□□□ -0.26
SHKBP1-217ENST00000598558 CD63P08962 238 aa13.41□□□□□ -0.26
SHKBP1-217ENST00000598558 FAM87AP0C7U9 286 aa13.41□□□□□ -0.26
SHKBP1-217ENST00000598558 MMP11P24347 488 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms