RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 MSH3P20585 1137 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 CALML3P27482 149 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 GP5P40197 560 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 PEX19P40855 299 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 GARSP41250 739 aaKnown RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 CCNG1P51959 295 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 MRPS5P82675 430 aaKnown RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 BEX3Q00994 111 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 YWHAHQ04917 246 aaPredicted RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 UBE2V1Q13404 147 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 RIPK1Q13546 671 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 TUBB2AQ13885 445 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 TRIM29Q14134 588 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 MORF4L2Q15014 288 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 ZNF674Q2M3X9 581 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 USH1GQ495M9 461 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 C9orf152Q5JTZ5 239 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 ERMARDQ5T6L9 678 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 NDUFAF5Q5TEU4 345 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 HHATQ5VTY9 493 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 ALKBH5Q6P6C2 394 aaKnown RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 IYDQ6PHW0 289 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 DCLRE1AQ6PJP8 1040 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 ANO5Q75V66 913 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 DGLUCYQ7Z3D6 616 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 TRPT1Q86TN4 253 aaKnown RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 DNAAF5Q86Y56 855 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 CCDC50Q8IVM0 306 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 NAT8LQ8N9F0 302 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 L3MBTL4Q8NA19 623 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 POGLUT1Q8NBL1 392 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 CNNM3Q8NE01 707 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 FCAMRQ8WWV6 532 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 N4BP2L2Q92802 583 aaPredicted RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 SLC35B4Q969S0 331 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 VPS33AQ96AX1 596 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 RMDN1Q96DB5 314 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 PGAP3Q96FM1 320 aaPredicted RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 NEK1Q96PY6 1258 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 GAD1Q99259 594 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 LITAFQ99732 161 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 JPH2Q9BR39 696 aaPredicted RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 THUMPD3Q9BV44 507 aaKnown RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 TUBB2BQ9BVA1 445 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 IQCGQ9H095 443 aaKnown RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 DENND2DQ9H6A0 471 aaPredicted RBP3.17□□□□□ -1.9
USP48-215ENST00000534705 VAT1LQ9HCJ6 419 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 PXMP2Q9NR77 195 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 GIMAP4Q9NUV9 329 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 C2orf16Q68DN1 1984 aa3.17□□□□□ -1.9
USP48-215ENST00000534705 C5orf42Q9H799 3197 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 PLXNA3P51805 1871 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 TEX13DA0A0J9YY54 714 aaPredicted RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 A0A1W2PQ09 198 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 TMEM221A6NGB7 291 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 GLOD5A6NK44 160 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 A8MV72 311 aaPredicted RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 KBTBD13C9JR72 458 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 PLK4O00444 970 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 PES1O00541 588 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 ADAM20O43506 726 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ZG16O60844 167 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 APOHP02749 345 aaPredicted RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 ASGR1P07306 291 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 PATE4P0C8F1 98 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 CALM1P0DP23 149 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 CALM2P0DP24 149 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 CALM3P0DP25 149 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 LIFP15018 202 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 PRLRP16471 622 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 FERP16591 822 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 TCF7P36402 384 aaPredicted RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 ACLYP53396 1101 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ATP12AP54707 1039 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ARHGAP1Q07960 439 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ACTN3Q08043 901 aaPredicted RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 XRCC4Q13426 336 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 KCNC3Q14003 757 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 E2F5Q15329 346 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 LACTB2Q53H82 288 aaPredicted RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 RAB41Q5JT25 222 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ARMC4Q5T2S8 1044 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 TMEM198Q66K66 360 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 RAB12Q6IQ22 244 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ARHGAP11AQ6P4F7 1023 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 LINGO4Q6UY18 593 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 RBMS3Q6XE24 437 aaKnown RBP3.16□□□□□ -1.9
USP48-215ENST00000534705 RUFY3Q7L099 469 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ANKRD33Q7Z3H0 272 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 KIAA1328Q86T90 577 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 TLK2Q86UE8 772 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 NLRP14Q86W24 1093 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 TMEM139Q8IV31 216 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 SCML4Q8N228 414 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 ZNF619Q8N2I2 560 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 CEP112Q8N8E3 955 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 SMYD1Q8NB12 490 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 FAM81AQ8TBF8 368 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 SETD6Q8TBK2 473 aa3.16□□□□□ -1.9
USP48-215ENST00000534705 GRK7Q8WTQ7 553 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms